Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1880 ATGGCGGCTTCTCTTTGCTTTTTGCTTCTCTTTTCTGTCTCTTTATTGTTGGCTGCTCCCACTTCCGCTTCTGTTCGAGATCCTCATCTTGTCGTTCAAGATGTTCAAAGGAGCATCAACGAATCAACATCAAGAAGAAACTTAGGATCATACTTCTCCTGCGGAACGGGAAACCCAATAGATGATTGCTGGAGGTGCGACCCAAATTGGGAAACCAATCGAAAGCGCTTAGCCGACTGCGCCATCGGGTTCGGCAAGAACGCGATCGGCGGCCGAAACGGGCGCATCTACGTCGTGACCGACGCGGCCAACGACGACCCAGTGAACCCAAGGCCAGGAACCCTCCGCCACGCCGTGATCCAAAACGAACCATTATGGATCATATTCAAACGCGACATGGTAATCCAACTCAAGCAGGAACTAATCGTGAACTCATTCAAAACAATAGACGGGCGTGGGGCCAGCGTACACGTGGCAGGTGGGCCATGCATAAAGATCCACTACGCGACGAACATAATAATCCACGGGATCCACGTGCACGATTGCAAGAGAGGGGGGAACGGTAGGATACGGGACTCCCCAGAGCATGATGGGTGGTGGGTTGAATCGGACGGTGATGGTGTGTCCATCTTTGGCGGGAGGGATGTTTGGGTTGACCATTGTTCTTTGTCGAATTGTAATGATGGGTTGATCGATGCGATTCATGGTTCGACGGGGATTACGATTTCGAATAATTATATGACGCATCATGATAAGGTTATGTTGTTGGGACATAGTGATTCCTATTTTCGGGATAAGGATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAGGGACTTGTCCAACGAATGCCAAGATGCAGACATGGATATTTCCATGTAGTGAACAACGACTACACCCACTGGGAAATGTACGCGATCGGAGGCAGTGCTTCGCCCACCATATACAGCCAAGGCAACAGATTTTTGGCGCCCGACAACCGCTTCCGAAAGGAGGTGACCAAGCACGAAGACGCACCCGAGTCCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGTTGTTGAACGGCGCCTTTTTCCTCCAGTCCGGCGCTGGCGCTTCCTCCAGCTATGCCAGAGCTTACAGCCTCAGCGCTCGACCCTCCTCCCTCGTCGGCTCGATCACCGTCACCGCAGGCGCCCTTAACTGCCGCAGGGGCTCCCGCTGCTAG 1221 52.66 MAASLCFLLLFSVSLLLAAPTSASVRDPHLVVQDVQRSINESTSRRNLGSYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRIYVVTDAANDDPVNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELIVNSFKTIDGRGASVHVAGGPCIKIHYATNIIIHGIHVHDCKRGGNGRIRDSPEHDGWWVESDGDGVSIFGGRDVWVDHCSLSNCNDGLIDAIHGSTGITISNNYMTHHDKVMLLGHSDSYFRDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDNRFRKEVTKHEDAPESEWRHWNWRSEGDMLLNGAFFLQSGAGASSSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33382568 33387291 - Sed0022344.1 Sed11g1880 730526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1880 406 Gene3D - 57 399 IPR012334 -
Sed11g1880 406 PANTHER PECTATE LYASE 18-RELATED 8 403 IPR045032 GO:0030570(InterPro)
Sed11g1880 406 Pfam Pectate lyase 139 323 IPR002022 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Sed11g1880 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Sed11g1880 406 SMART amb_all 132 329 IPR002022 -
Sed11g1880 406 FunFam Pectate lyase 57 399 - -
Sed11g1880 406 SUPERFAMILY Pectin lyase-like 50 401 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0011 Sed-Chr4:77612 Sed11g1880 Sed-Chr11:33382568 2.00E-181 dispersed
Sed08g2039 Sed-Chr8:34637426 Sed11g1880 Sed-Chr11:33382568 1.50E-82 dispersed
Sed10g0588 Sed-Chr10:3888184 Sed11g1880 Sed-Chr11:33382568 6.20E-124 dispersed
Sed11g1880 Sed-Chr11:33382568 Sed12g0409 Sed-Chr12:2470045 1.80E-161 dispersed
Sed11g1880 Sed-Chr11:33382568 Sed02g1468 Sed-Chr2:50689600 1.50E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1880 K01728 - csv:101217834 716.842