Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1912 ATGCAGAGCGCTGTATCGGCTATGGCTATGTCTTTTTCCCCCAATTCTTCTACTTCTATGTCATTGCCTCTGATTTCTTGCCCTAATTTGCCTCACTTGTCGCACCTTCTTCGGTTCCGATCCCGCCGCTCGATCTCTGGGTGTTGTTGTTCTTCTTCTGGATCCAGATTCAGGCTCCAGAATTTCACGGCAATGGCGGCCTCCCTGCCGGAGAGCGCCGGCGAGGCCGTGGAATCGGCCGATTTCGTTTACAATCTTCGGCTGGGTTCCATGTTTGCTGTTTGGTACCTTTTGAATATCTACTACAACATCTTCAACAAACAGGTTCTGAAAGCCTTTCCCTTCCCAACTACGGTTACAGCTTTTCAGTCCGGGTGTGGAACTGTAATAATAACCTTAATGTGGGCTCTCAATTTTCACCATAGACCCAACATCAATCGGTCCCAGTTTGCTACCATTCTTTTGCTGGCTGTGGCCCACACAATGGGAAACATATTGACCAATGTGAGTCTTGGGAGAGTTGCAGTTTCATTCACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTCATGCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCTCATTTTGGGTTGTTCTTTCTCTGGTACCTGTTGTAGGAGGAGTGGGACTCGCATCTTTCACTGAAGCCTCATTTAATTGGATTGGTTTCAGCAGTGCCATGGCTTCAAATCTTACAAACCAATCACGTAATATCTTGAGCAAAAAATTCATGGTCGACAAAGAGGCATTGGACAACATCAATCTCTTCTCTGTAATTACCATCATTTCATTTATCCTACTGGTTCCCTCAGCCCTTCTCCTTGAAGGCACTAAATTTAGTCCTTCATACCTGCAATTAGCTGCAAATCAAGGGCTGAATGTCAAAGAGCTATGCATTAGGTTGCTTCTATCAGGCATCTGTTTTCATAGTTATCAGCAGGTTTCATATTCAATACTACAGGAAATTTCACCAGTGACTCATGCAGTTGGAAATTCACTGAAGCGTGTGGTGGTTATAGTTTCCTCTGTTCTTTTCTTCCAAACAGCTGTCTCACCTCTAAATGCCTTGGGAACTGCCATAGCTCTGGTGGGAGTTTTCTTGTATTCAAGGGCAAAACGTATAAAGCCAAAGCTGAAAGCTGTGTAA 1173 44.76 MQSAVSAMAMSFSPNSSTSMSLPLISCPNLPHLSHLLRFRSRRSISGCCCSSSGSRFRLQNFTAMAASLPESAGEAVESADFVYNLRLGSMFAVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQSGCGTVIITLMWALNFHHRPNINRSQFATILLLAVAHTMGNILTNVSLGRVAVSFTHTIKAMEPFFTVMLSALFLAERPSFWVVLSLVPVVGGVGLASFTEASFNWIGFSSAMASNLTNQSRNILSKKFMVDKEALDNINLFSVITIISFILLVPSALLLEGTKFSPSYLQLAANQGLNVKELCIRLLLSGICFHSYQQVSYSILQEISPVTHAVGNSLKRVVVIVSSVLFFQTAVSPLNALGTAIALVGVFLYSRAKRIKPKLKAV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33588037 33600499 + Sed0011704.1 Sed11g1912 730558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1912 390 Pfam Triose-phosphate Transporter family 86 378 IPR004853 -
Sed11g1912 390 PANTHER SOLUTE CARRIER FAMILY 35 81 381 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Sed11g1912 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 305 382 - -
Sed11g1912 390 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 86 387 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed11g1912 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 133 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2515 Sed-Chr8:37910257 Sed11g1912 Sed-Chr11:33588037 5.10E-111 dispersed
Sed11g1912 Sed-Chr11:33588037 Sed12g0279 Sed-Chr12:1599613 1.00E-60 dispersed
Sed11g1912 Sed-Chr11:33588037 Sed01g1658 Sed-Chr1:12028864 6.70E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1912 K15283 - csv:101217436 561.607