Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1927 ATGGATCATTCGCTCGAGACTTCGAGGCACAAGTGTGCAGCTTGCTTCAGGCAATTCAACAAGATAGAGCACTTGGTTGATCATATGAGGACCTCTTTTCATTCTGTTCATGAACCCACTTGTGCTATTTGCAAGAAACATTGTAGATCTCTTGATTCTCTTAGAGAACATCTTATTGGGCCACTCCCAAAGCAAGAATGCAATAACATTTTTGCTACAAGAGGATGCAAGTTTTGTTTGGCCATGTTTGACACTTCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCCGGTGTAAATTCGGGGCTTCTTGCTCGGTTCGCCAACATGGGAATTCGTGACGGTTCGAGCATCGTCGACAATGGAAGAGCTCGAGGCTCGGGTGCGGTGGCGTTAGCTTGCAAATATGTTGGTGGCGGGAGTGATGGGTCGGTGGATATATGCGCCAAGGTTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCCATAGCTATATCAAGCCAATAATTCCAGTTACAAATTATAGGTATGAAACAACGGGCATTCGTCCAGAACACTTTAGGGAGGCAATGATGCTGAAGCAATGTCAAAAGAAAATTCAAGATATTCTTTACAATGGAGGTGAGAAGGCTAGGGTTCTTGTTGGTCACTCGGTGGAAGACGATCTCAAACGCCTACAAATCGGCTATCCATCCATCATGTTAAGGGATACAGCTAATTATCCGCCATTAATGAAGACAAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTCTATCTTGGATTTGAGATTCAAAATGGGATACAAGATCCATATGAAGATTGTGTTGCAGCCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGAAAGAAAACCATCCAATGGCTTCAGATCCACAAAACAAAAATAACTTTGCAATTTGGAAGGAAAATGAGCTTCAGAGGATGGCCCCACAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCCAAAATTTGA 1035 42.42 MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPTCAICKKHCRSLDSLREHLIGPLPKQECNNIFATRGCKFCLAMFDTSYSQRLHQERCQFSGVNSGLLARFANMGIRDGSSIVDNGRARGSGAVALACKYVGGGSDGSVDICAKVCLIDESENVIFHSYIKPIIPVTNYRYETTGIRPEHFREAMMLKQCQKKIQDILYNGGEKARVLVGHSVEDDLKRLQIGYPSIMLRDTANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGIQDPYEDCVAAMRLYKRMRSQVHRKENHPMASDPQNKNNFAIWKENELQRMAPQQMLEISRSDYYCWCMDSKI 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33693712 33696744 + Sed0012755.1 Sed11g1927 730573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1927 344 SUPERFAMILY Ribonuclease H-like 144 291 IPR012337 -
Sed11g1927 344 Gene3D Classic Zinc Finger 1 60 - -
Sed11g1927 344 Gene3D - 128 310 IPR036397 GO:0003676(InterPro)
Sed11g1927 344 Pfam Exonuclease 153 284 IPR013520 -
Sed11g1927 344 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Sed11g1927 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Sed11g1927 344 CDD REX4_like 132 287 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Sed11g1927 344 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 342 IPR047021 GO:0004527(PANTHER)|GO:0004527(InterPro)|GO:0005634(PANTHER)
Sed11g1927 344 SMART exoiiiendus 130 295 IPR013520 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0015 Sed-Chr5:131480 Sed11g1927 Sed-Chr11:33693712 2.50E-79 dispersed
Sed05g0016 Sed-Chr5:131480 Sed11g1927 Sed-Chr11:33693712 5.60E-82 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1927 - - - 0.0