Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g1944 | ATGGAAGGAGTAGTGGCGTTTCCGGCGATGATAACGATGGAGTGCATCAACGTCGGCCTGAACACTCTGTTCAAATCCGCCACCGATTCCGGCATGAGCCACCGCGTGTTCCTCGTGTATTCCTACTCCCTCGCCGCCCTCCTCCTCCTCCCTTCCCCCTTCCTTTCCGCCAGATCGAGGCGGTTGCCGCCGCTGAATGGCTCTGTTCTTTCGAAGATTGCTGTGCTTGGACTGATCGGATGTTGTTCGCAGATTATGGGGTACACGGGCATCCGATACAGTTCTCCCACTCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTCGCCCTCATTTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCAAAAGTGATGGGCACTATAATATCAATATCAGGTGCATTTGTGGTGACTCTTTACAAGGGCCCAAGGATCATATTCTCCTCAGCACCCACATCTCTTTCACTTCATCACCCATTAACAGCCTCGTCTGACTCTAATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATCGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGACAACAGTGATCTTCTTCTACAACTTAATTGTGGCCTTCTTATCTGCAATTGTAGGAGTCATTTTAGAGAAAAACCCAAGTGCTTGGATTTTGAGGCAAAATACAGCTTTGGCCTCTGTTTTATGCTCTGGACTTTTTGGATCATGCTTGAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCGGTCTTTGTTGCAATGTTTAAGCCGTTGTCAATTGTCGTCGCTATTGTAATGGGCGTCCTGTTTCTTGGTGATTCTCTATATCTCGGAAGTCTAATTGGAGCATCCATAATATCCATAGGATTTTATGCAGTAATGTGGGGGAAAGCAAAAGAAATGGGTGAAAAAGAAGAGAAAGAAGAAAACCATAGGCATAATCTTATTGGTAACAAGGAATCACATGAAGATCAAAGAGCACCTCTTCTTGGAAGCTACAATGCAGACAGATACAGTTCAGACAATGTATGA | 1101 | 45.14 | MEGVVAFPAMITMECINVGLNTLFKSATDSGMSHRVFLVYSYSLAALLLLPSPFLSARSRRLPPLNGSVLSKIAVLGLIGCCSQIMGYTGIRYSSPTLASAISNLVPAFTFILALIFRMEKVVLKSNSSQAKVMGTIISISGAFVVTLYKGPRIIFSSAPTSLSLHHPLTASSDSNWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEETTVIFFYNLIVAFLSAIVGVILEKNPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYAVMWGKAKEMGEKEEKEENHRHNLIGNKESHEDQRAPLLGSYNADRYSSDNV | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 33783997 | 33789848 | + | Sed0002128.1 | Sed11g1944 | 730590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g1944 | 366 | PANTHER | WAT1-RELATED PROTEIN | 9 | 330 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
Sed11g1944 | 366 | MobiDBLite | consensus disorder prediction | 326 | 349 | - | - | |
Sed11g1944 | 366 | Pfam | EamA-like transporter family | 19 | 147 | IPR000620 | GO:0016020(InterPro) | |
Sed11g1944 | 366 | Pfam | EamA-like transporter family | 193 | 317 | IPR000620 | GO:0016020(InterPro) | |
Sed11g1944 | 366 | MobiDBLite | consensus disorder prediction | 326 | 366 | - | - | |
Sed11g1944 | 366 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 44 | 150 | - | - | |
Sed11g1944 | 366 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 217 | 321 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0070 | Sed-Chr2:8622739 | Sed11g1944 | Sed-Chr11:33783997 | 1.50E-65 | dispersed | |
Sed04g0647 | Sed-Chr4:5083563 | Sed11g1944 | Sed-Chr11:33783997 | 1.10E-43 | dispersed | |
Sed11g1944 | Sed-Chr11:33783997 | Sed11g1946 | Sed-Chr11:33783997 | 1.30E-134 | dispersed | |
Sed11g1944 | Sed-Chr11:33783997 | Sed11g1945 | Sed-Chr11:33783997 | 1.20E-196 | tandem | |
Sed11g1944 | Sed-Chr11:33783997 | Sed03g0149 | Sed-Chr3:930140 | 2.80E-68 | wgd | |
Sed11g1944 | Sed-Chr11:33783997 | Sed06g0579 | Sed-Chr6:5049782 | 1.50E-74 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g1944 | - | - | - | 0.0 |