Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1944 ATGGAAGGAGTAGTGGCGTTTCCGGCGATGATAACGATGGAGTGCATCAACGTCGGCCTGAACACTCTGTTCAAATCCGCCACCGATTCCGGCATGAGCCACCGCGTGTTCCTCGTGTATTCCTACTCCCTCGCCGCCCTCCTCCTCCTCCCTTCCCCCTTCCTTTCCGCCAGATCGAGGCGGTTGCCGCCGCTGAATGGCTCTGTTCTTTCGAAGATTGCTGTGCTTGGACTGATCGGATGTTGTTCGCAGATTATGGGGTACACGGGCATCCGATACAGTTCTCCCACTCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTCGCCCTCATTTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCAAAAGTGATGGGCACTATAATATCAATATCAGGTGCATTTGTGGTGACTCTTTACAAGGGCCCAAGGATCATATTCTCCTCAGCACCCACATCTCTTTCACTTCATCACCCATTAACAGCCTCGTCTGACTCTAATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATCGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGACAACAGTGATCTTCTTCTACAACTTAATTGTGGCCTTCTTATCTGCAATTGTAGGAGTCATTTTAGAGAAAAACCCAAGTGCTTGGATTTTGAGGCAAAATACAGCTTTGGCCTCTGTTTTATGCTCTGGACTTTTTGGATCATGCTTGAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCGGTCTTTGTTGCAATGTTTAAGCCGTTGTCAATTGTCGTCGCTATTGTAATGGGCGTCCTGTTTCTTGGTGATTCTCTATATCTCGGAAGTCTAATTGGAGCATCCATAATATCCATAGGATTTTATGCAGTAATGTGGGGGAAAGCAAAAGAAATGGGTGAAAAAGAAGAGAAAGAAGAAAACCATAGGCATAATCTTATTGGTAACAAGGAATCACATGAAGATCAAAGAGCACCTCTTCTTGGAAGCTACAATGCAGACAGATACAGTTCAGACAATGTATGA 1101 45.14 MEGVVAFPAMITMECINVGLNTLFKSATDSGMSHRVFLVYSYSLAALLLLPSPFLSARSRRLPPLNGSVLSKIAVLGLIGCCSQIMGYTGIRYSSPTLASAISNLVPAFTFILALIFRMEKVVLKSNSSQAKVMGTIISISGAFVVTLYKGPRIIFSSAPTSLSLHHPLTASSDSNWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEETTVIFFYNLIVAFLSAIVGVILEKNPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYAVMWGKAKEMGEKEEKEENHRHNLIGNKESHEDQRAPLLGSYNADRYSSDNV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33783997 33789848 + Sed0002128.1 Sed11g1944 730590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1944 366 PANTHER WAT1-RELATED PROTEIN 9 330 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed11g1944 366 MobiDBLite consensus disorder prediction 326 349 - -
Sed11g1944 366 Pfam EamA-like transporter family 19 147 IPR000620 GO:0016020(InterPro)
Sed11g1944 366 Pfam EamA-like transporter family 193 317 IPR000620 GO:0016020(InterPro)
Sed11g1944 366 MobiDBLite consensus disorder prediction 326 366 - -
Sed11g1944 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 150 - -
Sed11g1944 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0070 Sed-Chr2:8622739 Sed11g1944 Sed-Chr11:33783997 1.50E-65 dispersed
Sed04g0647 Sed-Chr4:5083563 Sed11g1944 Sed-Chr11:33783997 1.10E-43 dispersed
Sed11g1944 Sed-Chr11:33783997 Sed11g1946 Sed-Chr11:33783997 1.30E-134 dispersed
Sed11g1944 Sed-Chr11:33783997 Sed11g1945 Sed-Chr11:33783997 1.20E-196 tandem
Sed11g1944 Sed-Chr11:33783997 Sed03g0149 Sed-Chr3:930140 2.80E-68 wgd
Sed11g1944 Sed-Chr11:33783997 Sed06g0579 Sed-Chr6:5049782 1.50E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1944 - - - 0.0