Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1945 ATGGAAGGAGTAGTGGCGTTTCCGGCGATGATAACGATGGAGTGCATCAACGTCGGCCTGAACACTCTGTTCAAATCCGCCACCGATTCCGGCATGAGCCACCGCGTGTTCCTCGTGTATTCCTACTCCCTCGCCGCCCTCCTCCTCCTCCCTTCCCCCTTCCTTTCCGCCAGGTTTTTCTTTCGATTCGACTCTTTCCATTTCGATTTTGGTTTTTGGTTTAGATTTAGATTTTGGTGCAGATCGAGGCGGTTGCCGCCGCTGAATGGCTCTGTTCTTTCGAAGATTGCTGTGCTTGGACTGATCGGATGTTGTTCGCAGATTATGGGGTACACGGGCATCCGATACAGTTCTCCCACTCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTCGCCCTCATTTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCAAAAGTGATGGGCACTATAATATCAATATCAGGTGCATTTGTGGTGACTCTTTACAAGGGCCCAAGGATCATATTCTCCTCAGCACCCACATCTCTTTCACTTCATCACCCATTAACAGCCTCGTCTGACTCTAATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATCGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGACAACAGTGATCTTCTTCTACAACTTAATTGTGGCCTTCTTATCTGCAATTGTAGGAGTCATTTTAGAGAAAAACCCAAGTGCTTGGATTTTGAGGCAAAATACAGCTTTGGCCTCTGTTTTATGCTCTGGACTTTTTGGATCATGCTTGAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCGGTCTTTGTTGCAATGTTTAAGCCGTTGTCAATTGTCGTCGCTATTGTAATGGGCGTCCTGTTTCTTGGTGATTCTCTATATCTCGGAAGTCTAATTGGAGCATCCATAATATCCATAGGATTTTATGCAGTAATGTGGGGGAAAGCAAAAGAAATGGGTGAAAAAGAAGAGAAAGAAGAAAACCATAGGCATAATCTTATTGGTAACAAGGAATCACATGAAGATCAAAGAGCACCTCTTCTTGGAAGCTACAATGCAGACAGATACAGTTCAGACAATGTATGA 1170 44.44 MEGVVAFPAMITMECINVGLNTLFKSATDSGMSHRVFLVYSYSLAALLLLPSPFLSARFFFRFDSFHFDFGFWFRFRFWCRSRRLPPLNGSVLSKIAVLGLIGCCSQIMGYTGIRYSSPTLASAISNLVPAFTFILALIFRMEKVVLKSNSSQAKVMGTIISISGAFVVTLYKGPRIIFSSAPTSLSLHHPLTASSDSNWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEETTVIFFYNLIVAFLSAIVGVILEKNPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYAVMWGKAKEMGEKEEKEENHRHNLIGNKESHEDQRAPLLGSYNADRYSSDNV 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33783997 33789848 + Sed0002128.2 Sed11g1945 730591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1945 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 79 173 - -
Sed11g1945 389 PANTHER WAT1-RELATED PROTEIN 9 353 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed11g1945 389 MobiDBLite consensus disorder prediction 349 389 - -
Sed11g1945 389 MobiDBLite consensus disorder prediction 349 372 - -
Sed11g1945 389 Pfam EamA-like transporter family 216 340 IPR000620 GO:0016020(InterPro)
Sed11g1945 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0149 Sed-Chr3:930140 Sed11g1945 Sed-Chr11:33783997 3.00E-64 dispersed
Sed06g0579 Sed-Chr6:5049782 Sed11g1945 Sed-Chr11:33783997 2.10E-68 dispersed
Sed11g1945 Sed-Chr11:33783997 Sed07g2342 Sed-Chr7:39296968 3.30E-43 dispersed
Sed11g1944 Sed-Chr11:33783997 Sed11g1945 Sed-Chr11:33783997 1.20E-196 tandem
Sed11g1945 Sed-Chr11:33783997 Sed11g1946 Sed-Chr11:33783997 5.40E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1945 - - - 0.0