Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1947 ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCAGCACTTGAAAATCAAGTTCTCAAGGCTTGGAATGTTCTAGCTCGCCGTCAGATTAGTACCCAACTCATCGAAATCGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTCGAACCCACAAAAGTTGAATCCGTCGTTAAGAATTTCGCTTCCAAACAGGAACCCTTGCCTTTGTCTTTGTCATCAATTGGCAGCTTTCCCAGTGACAGCAACATTCTCTTTCTGGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCCCAATTGTGTGAAGCAATGAGGAAAGAAGGAATCGAAATCGGGGACGAATATCGGCTCGGTTCGTGGATTCCCCATTGCGATGTTGCTCAGGAGGTGCCTCGGGCTCGAATGGCAGAGGCATTTTGTGTTCTGAGGGATTTGAAGCTTCCTGTTTCCGGGTATGCAATTGATATTGGGTTGGTTGAATTTTCCCCTGTTAGAGAGCTGTTCTCTTTTGTTCTTGGTAACACTAATGAAGCTTAA 552 46.56 MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33790629 33791913 + Sed0025070.1 Sed11g1947 730593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1947 183 Pfam 2'-5' RNA ligase superfamily 40 164 - -
Sed11g1947 183 SUPERFAMILY LigT-like 5 153 IPR009097 -
Sed11g1947 183 Gene3D Cyclic phosphodiesterase 5 178 - -
Sed11g1947 183 PANTHER - 1 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1947 Sed-Chr11:33790629 Sed03g0150 Sed-Chr3:936850 3.90E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1947 - - - 0.0