Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1949 ATGGCTCCAAACTCTGTCGTTGTCACAATCGAGAAGCATAATGGCTTCCCTTTACTCGAAATCAATGCCTCTGATTCATTGTTGCTTCCTAAGAAGAACAAAGCTGCCAGTCCCAAGCAACTCACATGGGTTCTTCTCCTCAAAGCTCACAAAGCTCTGTTTTTCTTCTCATGGTTAGCCATGTTAGTGAAGACTGCCTTTTTTTCTGTTAAGAAACGAATTGCTTATGCTGATATCAATGAAGATGATTCCAAAACCAGAGGGAGGTTGTATAGGTTCATTAAGGGTTTTCTGGCGATTTCGATTGCGGGTTTGATTGTTGAAACTTTTGCCCATTTCAAGAAGTGGAATCTGGGAATTGAAGTTCGTGGGATTTTTCATTGGGTTTATGTTTCTTGGCTTTCGTTTCGTGTTGATTACATTGCTCCATTGGTGTTAATGCTTTCTAAATTCTGTGTTGTTCTGTTTTTTATCCAATCTCTTGATCGCCTTGTTCTGTGTGTTGGGTGTTTTTGGATCAAGTATAAGAGAATCAAACCCGTGATACAGGATAATGCTTATGATTTGGAGGATGATTCAAGTTTTCCCATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAGAGAGGTTTATGCTCAATCTATTGCTGCTGCTTGTGAGCTCGATTGGCCGAGAGATCGGATTTTGATTCAAGTTCTTGATGATTCGGACGATGGAAATCTTCAGCGTTTGATCAATGATGAAGTTCTGTCTTGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGGTTGATCCGAACTGGGTATAAAGCTGGGAATCTTAAGTCTGCCATGGATTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTTCTTAAACTGACTGTTCCCCATTTCAAGGGAAATCCTCAACTCGGTCTCGTCCAAGCACGGTGGGCGTTTGTTAACAGGGACGAAAACTTACTTACGAGACTCCAAAACATCAACTTGTGCTTTCACTTTGAAGTGGAGCAGCAAGTTAATGGGGTTTTCCTGAACTTCTTTGGATTCAATGGAACGGCAGGCGTTTGGAGAACGCAAGCGCTTGAGGAAGCTGGTGGCTGGCTCGAGCGAACGACAGTGGAGGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAGCAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTGCAATCATTGCTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTCCTGTTCTTTCTCTTGAGAAAACTTATACTTCCATTTTATTCATTTACTTTGTTTTGCATTATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTCTGGGTAATTTGCTACATCCCAGTCTTCTTGTCATTGCTAAACATTCTCCCATCACCAAAATCCTTCCCCTTCTTGATCCCATACCTCTTGTTTGAGAACACCATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGTTCATACGAATGGATCGTGACGAAGAAGACAGGGCGATCGTCAGAATCCGACTTCTTAGCACTCGCCAAGCAAGAGTCGAAAACTGCAAATGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGGCTCGAGCTGTTGAGTAAATTGAACCAACAAGAGAAGCAAATTGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTAACTGCATCAGCTAGAAGCTTGCTGTCAGCACAAGGAGTTCATTTCTATTTCTTGCTATTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 1983 41.65 MAPNSVVVTIEKHNGFPLLEINASDSLLLPKKNKAASPKQLTWVLLLKAHKALFFFSWLAMLVKTAFFSVKKRIAYADINEDDSKTRGRLYRFIKGFLAISIAGLIVETFAHFKKWNLGIEVRGIFHWVYVSWLSFRVDYIAPLVLMLSKFCVVLFFIQSLDRLVLCVGCFWIKYKRIKPVIQDNAYDLEDDSSFPMVLVQIPMCNEREVYAQSIAAACELDWPRDRILIQVLDDSDDGNLQRLINDEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMDCDYVKDYEFVAILDADFQPNPDFLKLTVPHFKGNPQLGLVQARWAFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTQALEEAGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPAIIASKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFLSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKTGRSSESDFLALAKQESKTANEEKILRRHSESGLELLSKLNQQEKQIGSKKKRNKVYRKELALAFLLLTASARSLLSAQGVHFYFLLFQGLSFLVVGLDLIGEQMN 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33794837 33797934 - Sed0027810.1 Sed11g1949 730595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1949 660 FunFam probable xyloglucan glycosyltransferase 5 190 414 - -
Sed11g1949 660 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 112 659 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Sed11g1949 660 Pfam Glycosyl transferase family group 2 290 499 IPR001173 -
Sed11g1949 660 Coils Coil 594 614 - -
Sed11g1949 660 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 188 415 IPR029044 -
Sed11g1949 660 SUPERFAMILY Nucleotide-diphospho-sugar transferases 198 499 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1949 K20887 - - csv:101208151 1165.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1949 Sed-Chr11:33794837 Sed13g2106 Sed-Chr13:25730419 3.60E-268 dispersed
Sed11g1949 Sed-Chr11:33794837 Sed03g0153 Sed-Chr3:945109 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33