Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1949 ATGGCTCCAAACTCTGTCGTTGTCACAATCGAGAAGCATAATGGCTTCCCTTTACTCGAAATCAATGCCTCTGATTCATTGTTGCTTCCTAAGAAGAACAAAGCTGCCAGTCCCAAGCAACTCACATGGGTTCTTCTCCTCAAAGCTCACAAAGCTCTGTTTTTCTTCTCATGGTTAGCCATGTTAGTGAAGACTGCCTTTTTTTCTGTTAAGAAACGAATTGCTTATGCTGATATCAATGAAGATGATTCCAAAACCAGAGGGAGGTTGTATAGGTTCATTAAGGGTTTTCTGGCGATTTCGATTGCGGGTTTGATTGTTGAAACTTTTGCCCATTTCAAGAAGTGGAATCTGGGAATTGAAGTTCGTGGGATTTTTCATTGGGTTTATGTTTCTTGGCTTTCGTTTCGTGTTGATTACATTGCTCCATTGGTGTTAATGCTTTCTAAATTCTGTGTTGTTCTGTTTTTTATCCAATCTCTTGATCGCCTTGTTCTGTGTGTTGGGTGTTTTTGGATCAAGTATAAGAGAATCAAACCCGTGATACAGGATAATGCTTATGATTTGGAGGATGATTCAAGTTTTCCCATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAGAGAGGTTTATGCTCAATCTATTGCTGCTGCTTGTGAGCTCGATTGGCCGAGAGATCGGATTTTGATTCAAGTTCTTGATGATTCGGACGATGGAAATCTTCAGCGTTTGATCAATGATGAAGTTCTGTCTTGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGGTTGATCCGAACTGGGTATAAAGCTGGGAATCTTAAGTCTGCCATGGATTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTTCTTAAACTGACTGTTCCCCATTTCAAGGGAAATCCTCAACTCGGTCTCGTCCAAGCACGGTGGGCGTTTGTTAACAGGGACGAAAACTTACTTACGAGACTCCAAAACATCAACTTGTGCTTTCACTTTGAAGTGGAGCAGCAAGTTAATGGGGTTTTCCTGAACTTCTTTGGATTCAATGGAACGGCAGGCGTTTGGAGAACGCAAGCGCTTGAGGAAGCTGGTGGCTGGCTCGAGCGAACGACAGTGGAGGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAGCAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTGCAATCATTGCTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTCCTGTTCTTTCTCTTGAGAAAACTTATACTTCCATTTTATTCATTTACTTTGTTTTGCATTATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTCTGGGTAATTTGCTACATCCCAGTCTTCTTGTCATTGCTAAACATTCTCCCATCACCAAAATCCTTCCCCTTCTTGATCCCATACCTCTTGTTTGAGAACACCATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGTTCATACGAATGGATCGTGACGAAGAAGACAGGGCGATCGTCAGAATCCGACTTCTTAGCACTCGCCAAGCAAGAGTCGAAAACTGCAAATGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGGCTCGAGCTGTTGAGTAAATTGAACCAACAAGAGAAGCAAATTGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTAACTGCATCAGCTAGAAGCTTGCTGTCAGCACAAGGAGTTCATTTCTATTTCTTGCTATTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 1983 41.65 MAPNSVVVTIEKHNGFPLLEINASDSLLLPKKNKAASPKQLTWVLLLKAHKALFFFSWLAMLVKTAFFSVKKRIAYADINEDDSKTRGRLYRFIKGFLAISIAGLIVETFAHFKKWNLGIEVRGIFHWVYVSWLSFRVDYIAPLVLMLSKFCVVLFFIQSLDRLVLCVGCFWIKYKRIKPVIQDNAYDLEDDSSFPMVLVQIPMCNEREVYAQSIAAACELDWPRDRILIQVLDDSDDGNLQRLINDEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMDCDYVKDYEFVAILDADFQPNPDFLKLTVPHFKGNPQLGLVQARWAFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTQALEEAGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPAIIASKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFLSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKTGRSSESDFLALAKQESKTANEEKILRRHSESGLELLSKLNQQEKQIGSKKKRNKVYRKELALAFLLLTASARSLLSAQGVHFYFLLFQGLSFLVVGLDLIGEQMN 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33794837 33797934 - Sed0027810.1 Sed11g1949 730595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1949 660 FunFam probable xyloglucan glycosyltransferase 5 190 414 - -
Sed11g1949 660 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 112 659 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Sed11g1949 660 Pfam Glycosyl transferase family group 2 290 499 IPR001173 -
Sed11g1949 660 Coils Coil 594 614 - -
Sed11g1949 660 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 188 415 IPR029044 -
Sed11g1949 660 SUPERFAMILY Nucleotide-diphospho-sugar transferases 198 499 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1949 Sed-Chr11:33794837 Sed13g2106 Sed-Chr13:25730419 3.60E-268 dispersed
Sed11g1949 Sed-Chr11:33794837 Sed03g0153 Sed-Chr3:945109 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1949 K20887 - csv:101208151 1165.21