Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1975 ATGAAAATCTGCTCAAACTTCATCTTCTTCACATGGATTTCTCTTCATCATCTTCTTCTTCTTCTTCTACTTTGCGCTTCTCCATCGTTCTCTGCAATCACAGAAGACGATATAAGGTGTCTTCGAGGCGTAAAAGCTTCGCTAATCGATCCTTTAGGGAAGCTCAGTTCATGGGATTTCAAGAACACCTCCGTTGGCAGCCTCTGCAAATTCGTCGGACTTTCCTGCTGGAACGACCGGGAGAATCGGATTCTGAGCTTGGAGCTTAGGGATATGAAGCTCTCCGGTTCGATTTCGGAGGATTTGCAGTATTGTGTGAGCTTGCAGAGGCTGGATCTGTCCGGAAACTCGTTTTCCGGCGCGATTCCGTCGCGTATTTGTAAGTGGATTCCTTATGTTGTTAATTTTGATTTGTCGAATAATCAATTTTCTGGACCTATTCCGCCTGATCTTGCTGGATGTTCTTATCTTAATTCGTTGATTTTGTCTGGTAATGAGCTTTCCGGTTCGATTCCTGTTGAACTCACTAGTTTGGGTAGGCTTAACAAGTTTTCTGTAGCGAATAATCATCTTACTGGTTCTGTTCCCCAATTTTTTGATAAATTTGGGAGGGAGAATTTTGATGGGAATAGTGATTTGTGTGGCGGGCCGGTTGGATCGAGCTGCGGCGGGCTGAGCAAGAAGAATCTGGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCAGCTTCTTTGTTGTTAGGGTTTGGTCTGTGGTGGTGGTATCATTCTAGGATGAACATGAAGAAGAGAAGAGGATATGGGGAGGGGTTTACAGGGGATTGGGCTGATAGATTGAGAGCTTATAAGTTAGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTCAAAGTTAAATTGGCTGATTTGATGGCTGCTACTAACAATTTCAATGCTGAAAATATATTGGTTTCTTCTAGAACTGGTACTACTTATAAAGCTGTTCTTCCTGATGGATCTGTGCTCGCGATAAAGCGGCTCAATACTTGTAAGCTTGGCGAGAAGCTGTTTCGGATGGAAATGAACCGGTTGGGATTGATAAGGCACCCGAATTTGACACCCCTTTTGGGATTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCGAATGGGACTTTGTCTTCTTTGTTACATGGAAATGGGGAGATTTTGGATTGGCCAACTAGGTTTAGGATTGGTCTTGGTGCAGCTAGGGGTCTTGTTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAATATTTGTTCTAGTGTTATTCTTGTGGATGATGACTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTGATGGCATCGAATTCTCACGACAGTAGTTTTGTCAATGGAGATTTAGGGGAGCTTGGCTACGTCGCTCCTGAATATCCGAGCACCATGATTGCTTCTTTGAAGGGGGATGTTTATGGATTTGGTGTTGTGCTTTTGGAGTTGGTCACGGGCCAAAAACCTCTAGAAGTTACTAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTACTTCGGGTCGAATGAAAGATGTTATCGATAAAGATCTTTGTGGAAAAGGGAACGACGAGGAAATCTTACAATTTCTGAAAATAACAATGAACTGCATTGTTTCTCGGCCCAAGGACAGGTGGTCTATGTATCAGGTTTATCAGTCGATGAAAACAATGGCTAAAGACTACAGTTTCTCTGAACAAGATGATGAGTTCCCAATTTTACCCGGCAAGGGAGATAACGAACCCGTGTAG 1827 43.08 MKICSNFIFFTWISLHHLLLLLLLCASPSFSAITEDDIRCLRGVKASLIDPLGKLSSWDFKNTSVGSLCKFVGLSCWNDRENRILSLELRDMKLSGSISEDLQYCVSLQRLDLSGNSFSGAIPSRICKWIPYVVNFDLSNNQFSGPIPPDLAGCSYLNSLILSGNELSGSIPVELTSLGRLNKFSVANNHLTGSVPQFFDKFGRENFDGNSDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKKRRGYGEGFTGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNAENILVSSRTGTTYKAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGLIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNGEILDWPTRFRIGLGAARGLVWLHHGCQPPFMHQNICSSVILVDDDYDARIMDFGLARLMASNSHDSSFVNGDLGELGYVAPEYPSTMIASLKGDVYGFGVVLLELVTGQKPLEVTKAEEGYKGNLVDWVNQLSTSGRMKDVIDKDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMKTMAKDYSFSEQDDEFPILPGKGDNEPV 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33994818 33997637 + Sed0022180.1 Sed11g1975 730621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1975 608 ProSiteProfiles Protein kinase domain profile. 309 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g1975 608 Pfam Protein tyrosine and serine/threonine kinase 331 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g1975 608 Gene3D Transferase(Phosphotransferase) domain 1 384 599 - -
Sed11g1975 608 Pfam Leucine Rich Repeat 157 178 IPR001611 GO:0005515(InterPro)
Sed11g1975 608 Pfam Leucine Rich Repeat 107 128 IPR001611 GO:0005515(InterPro)
Sed11g1975 608 Pfam Leucine Rich Repeat 135 154 IPR001611 GO:0005515(InterPro)
Sed11g1975 608 Pfam Leucine rich repeat N-terminal domain 35 77 IPR013210 -
Sed11g1975 608 SUPERFAMILY L domain-like 34 204 - -
Sed11g1975 608 Gene3D Ribonuclease Inhibitor 34 223 IPR032675 -
Sed11g1975 608 Gene3D Phosphorylase Kinase; domain 1 270 383 - -
Sed11g1975 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 272 383 - -
Sed11g1975 608 SUPERFAMILY Protein kinase-like (PK-like) 286 579 IPR011009 -
Sed11g1975 608 PANTHER RECEPTOR-LIKE PROTEIN 55 82 579 - -
Sed11g1975 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 34 223 - -
Sed11g1975 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 384 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1975 Sed-Chr11:33994818 Sed07g1049 Sed-Chr7:7561561 6.20E-65 dispersed
Sed07g0515 Sed-Chr7:3906704 Sed11g1975 Sed-Chr11:33994818 5.00E-123 transposed
Sed09g1044 Sed-Chr9:33842486 Sed11g1975 Sed-Chr11:33994818 2.80E-121 transposed
Sed11g1975 Sed-Chr11:33994818 Sed03g0171 Sed-Chr3:1081496 1.20E-286 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79925 PF07714 PK_Tyr_Ser-Thr 3.30E-28 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1975 - - - 0.0