Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g1984 | ATGGGTGATAATGATGAAGTCTTGGAAGCTGTTATGAAGGAAACTGTTGATTTGGAAAACGTGCCGATTGAAGAGGTTTTTCAGAGTTTGAGGTGTAGTACTAATGGTTTGACAACTGAGGCGGCTCGTCAGAGATTGACCCTTTTTGGACACAACAAACTGGAAGAAAAAAAGGAGAGTAAGGTTTTGAAGTTCTTGGGATTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCAGCTATTATGGCTATTGCTTTAGCTAATGGAGGAGGAAAACCTCCAGATTGGCAAGATTTTGTTGGGATCATAACCTTGTTACTTATCAATTCAACTATTAGTTTTATAGAGGAGAACAATGCTGGAAACGCTGCTGCCGCTCTCATGGCTCATCTTGCACCGAAAGCTAAGTCTGCTCTCACGGGTGAATCACTTCCTGTGACTAAAGGCCCCGGCGACAGTGTCTATTCAGGTTCGACATGCAAACAGGGAGAAATTGAAGCAGTTGTGATTGCTACTGGTGTTCATACTTTCTTTGGCAAAGCGGCACATCTTGTGGACTCCACAAACCAAGTGGGTCACTTCCAAAAGGTCTTGACTGCTATTGGGAATTTTTGCATATGTTCCATTGCTGTGGGCATGATCGTGGAGATTATTGTCATGTACCCAATCCAACATCGAGCATACCGTCCCGGGATCGACAATCTTCTGGTTCTTCTCATTGGAGGAATTCCTATTGCCATGCCAACTGTTTTGTCGGTGACAATGGCAATTGGATCACACCGTCTATCTCAACAGGGAGCTATCACTAAACGAATGACTGCAATAGAAGAAATGGCTGGAATGGACGTGCTTTGTAGTGACAAAACAGGAACACTTACCTTAAATAAGCTTACCGTTGACAAGACTCTGATAGAGGTTTTCGCCAAGGGAGTGGACGTGGATACTGTTGTTCTCATGGCAGCTCAAGCCTCTCGAGTTGAAAACCAAGATGCAATAGATGCTGCTATAGTAGGGATGTTAAGTGATCCAAAGGAGGCTCGAGCAGGCATTCAAGAGGTTCATTTCCTTCCCTTCAACCCAACTGACAAGCGAACTGCCCTTACATACATCGATGGTGATGGTAAAATGCATCGGGTCAGCAAAGGTGCTCCAGAGCAGATATTGAATCTTGCGCACAACAAATCCGAGATAGAAAGAAAAGTCCATGCTATTATTGACAAGTTTGCAGAGCGAGGATTGCGGTCTCTTGCCGTGGCTTACCAAGAGGTTCCAGAAGGAAGGAAGGAGAGTCATGGGGGGCCATGGCAATTCATTGGCCTAATGCCTCTGTTTGACCCACCAAGACATGATAGTGCAGAGACAATTAGAAGGGCTTTGAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTGGCAATCGGAAAAGAAACAGGACGTCGGCTTGGGATGGGAACAAATATGTACCCTTCATCTGCATTATTAGGGCAGATTAAAGATGAATCAATATCTGGATTGCCTGTTGATGACTTAATTGAAAAGGCTGATGGGTTTGCTGGTGTATTTCCCGAACACAAATATGAGATTGTGAAACGTTTACAAGCTCGAAAACATATATGTGGAATGACTGGAGATGGTGTTAATGATGCTCCTGCTCTTAAAAAGGCTGATATTGGCATAGCAGTTGCAGATGCAACCGATGCAGCTCGTAGCGCTTCTGATATTGTTCTTACTGAGCCTGGTCTTAGTGTTATTATAAGTGCTGTTCTAACCAGCAGGGCCATCTTTCAGAGGATGAAAAATTACACGATTTATGCAGTTTCAATTACAATTCGTATTGTGCTCGGATTCATGTTGCTGGCTCTTATATATCAATTTGACTTCCCACCTTTCATGGTTCTGATCATTGCTATCCTTAATGATGGTACCATAATGTCGATATCGAAGGATAGAGTGAAGCCGTCTCCTCTGCCAGATAGCTGGAAACTGGCAGAGATTTTTAGCACTGGAATTATACTGGGAGGTTATTTGGCTATGATGACTGTTATTTTCTTCTGGGCAGCTTACAGAACTGACTTCTTTCCACGTACATTTGGGGTTTCTAGCCTTCAAAAGAAGAATGAGGATGATTTCAGAAAGCTAGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCTCTCATCTTTGTTACACGGTCTCGGAGTTGGTCGTTTGTGGAGCGTCCTGGCCTGTTATTGGTTGTAGCTTTCGTTATTGCGCAACTGATTGCTACACTGATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATAGAAGGAATTGGCTGGGGCTGGGCTGGTGTAGTTTGGCTTTACAACCTCATCTTTTATTTCCCACTTGATATTATCAAATTTGCAATCAGATATGCCATTAGTGGTAGGGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTTACAAGGAAGAAGGATTTTGGGAAGGAAGAGCGTGAGCTCAAATGGGCGCACGCACAAAGGACACTTCATGGGCTGCAACCACCTGATGCTAAGATGTTTTCGGAGCGCACGGCATATACAGAACTCAATCAAATGGCTGAAGAAGCAAAACGACGAGCTGAAATTGCAAGGCTGAGAGAGCTGCACACACTGAAAGGTCATGTTGAATCAGTTGTGAGGCTGAAGGGTCTTGATATCAACACGATTCAACAGTCATACACAGTATAG | 2736 | 43.75 | MGDNDEVLEAVMKETVDLENVPIEEVFQSLRCSTNGLTTEAARQRLTLFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMAHLAPKAKSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFAKGVDVDTVVLMAAQASRVENQDAIDAAIVGMLSDPKEARAGIQEVHFLPFNPTDKRTALTYIDGDGKMHRVSKGAPEQILNLAHNKSEIERKVHAIIDKFAERGLRSLAVAYQEVPEGRKESHGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQIKDESISGLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMSISKDRVKPSPLPDSWKLAEIFSTGIILGGYLAMMTVIFFWAAYRTDFFPRTFGVSSLQKKNEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDIIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPDAKMFSERTAYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTV | 911 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 34039862 | 34046122 | + | Sed0026945.1 | Sed11g1984 | 730630 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g1984 | 911 | Gene3D | - | 283 | 582 | IPR023214 | - | |
| Sed11g1984 | 911 | PRINTS | H+-transporting ATPase (proton pump) signature | 545 | 561 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g1984 | 911 | PRINTS | H+-transporting ATPase (proton pump) signature | 402 | 420 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g1984 | 911 | PRINTS | H+-transporting ATPase (proton pump) signature | 517 | 533 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g1984 | 911 | PRINTS | H+-transporting ATPase (proton pump) signature | 576 | 601 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g1984 | 911 | PRINTS | H+-transporting ATPase (proton pump) signature | 721 | 742 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g1984 | 911 | SUPERFAMILY | Calcium ATPase, transduction domain A | 137 | 186 | IPR008250 | - | |
| Sed11g1984 | 911 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
| Sed11g1984 | 911 | Coils | Coil | 862 | 882 | - | - | |
| Sed11g1984 | 911 | Gene3D | - | 174 | 776 | - | - | |
| Sed11g1984 | 911 | FunFam | ATPase 4 plasma membrane-type | 530 | 776 | - | - | |
| Sed11g1984 | 911 | NCBIfam | HAD-IC family P-type ATPase | 137 | 307 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g1984 | 911 | NCBIfam | HAD-IC family P-type ATPase | 520 | 628 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed11g1984 | 911 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 137 | 767 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed11g1984 | 911 | FunFam | Plasma membrane ATPase | 298 | 445 | - | - | |
| Sed11g1984 | 911 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 19 | 137 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed11g1984 | 911 | Pfam | haloacid dehalogenase-like hydrolase | 282 | 559 | - | - | |
| Sed11g1984 | 911 | Gene3D | - | 298 | 445 | IPR023299 | GO:0000166(InterPro) | |
| Sed11g1984 | 911 | Gene3D | - | 860 | 911 | - | - | |
| Sed11g1984 | 911 | PRINTS | P-type cation-transporting ATPase superfamily signature | 462 | 472 | - | - | |
| Sed11g1984 | 911 | PRINTS | P-type cation-transporting ATPase superfamily signature | 136 | 150 | - | - | |
| Sed11g1984 | 911 | PRINTS | P-type cation-transporting ATPase superfamily signature | 286 | 300 | - | - | |
| Sed11g1984 | 911 | PRINTS | P-type cation-transporting ATPase superfamily signature | 440 | 451 | - | - | |
| Sed11g1984 | 911 | PRINTS | P-type cation-transporting ATPase superfamily signature | 545 | 564 | - | - | |
| Sed11g1984 | 911 | PRINTS | P-type cation-transporting ATPase superfamily signature | 568 | 580 | - | - | |
| Sed11g1984 | 911 | SFLD | C1.7: P-type atpase like | 268 | 596 | - | - | |
| Sed11g1984 | 911 | Gene3D | - | 68 | 139 | - | - | |
| Sed11g1984 | 911 | Gene3D | - | 140 | 173 | - | - | |
| Sed11g1984 | 911 | SUPERFAMILY | HAD-like | 282 | 592 | IPR036412 | - | |
| Sed11g1984 | 911 | Pfam | E1-E2 ATPase | 137 | 265 | - | - | |
| Sed11g1984 | 911 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 288 | 294 | IPR018303 | - | |
| Sed11g1984 | 911 | SFLD | p-type atpase | 268 | 596 | IPR044492 | - | |
| Sed11g1984 | 911 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 807 | IPR023298 | - | |
| Sed11g1984 | 911 | CDD | P-type_ATPase_H | 36 | 802 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed11g1984 | 911 | FunFam | Plasma membrane ATPase | 439 | 593 | - | - | |
| Sed11g1984 | 911 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g2568 | Sed-Chr8:38206175 | Sed11g1984 | Sed-Chr11:34039862 | 0.00E+00 | dispersed | |
| Sed11g1984 | Sed-Chr11:34039862 | Sed12g2309 | Sed-Chr12:33241248 | 0.00E+00 | dispersed | |
| Sed11g1984 | Sed-Chr11:34039862 | Sed08g0192 | Sed-Chr8:1079970 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g1984 | K01535 | - | csv:101211115 | 1647.1 |