Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1992 ATGGCTTCCCCTCATAGCTTCCTCTTCCAATCTCGCCCCGCCGATCGCCATGATTACGTCTCGTCAACCTCCTTCAACACCATCCCTACCTGCCCTCCTCAACACTACTATCACGATGGAGTAGTCCCACTGATGATGAAGCGATCAATGTCATTTTCGGGGGTGGAAAACGGGTGCGAGGACGGGAATGGAGAGGAGGGATTGTCGGATGATGGATCGGCGTTGGGCGAGAAGAAGAAGCGGCTTAGTATGGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGGTGGGGAACAAGCTTGAGCCAGAGAGGAAATTGCAGCTAGCCAAAGCTCTGGGGATGCAGCCAAGACAAATTGCTATTTGGTTTCAGAACAGAAGGGCCAGGTGGAAAACCAAGCAATTGGAGAGAGATTATGATGTCTTGAAGAAACAGTTTGAAGCTCTAAAGGTTGACAATGATGTGCTTCAAGCTCAAAATACTAAACTACATGCACAGTTAATAGCATTAAAAATCAAAGACTCCGGCGAGGCAGCGGGCGGGGGCGCCACCGTGAACCTAAAGAAAGAAAACGAACACGGTTGGAGCAGCGACAACAGTTGCGACATCAACCTTGACATCTCAAGAACACAAGCACCAATAACAACCAACAACAATGGCGGAAGATCATCAGCATGTTCCGAACCGGGCATAAGAGACCTGTTCCCGTCGGCAGCGTTCCGGTCCGCCGCCATAACGCAGCTGCTGAATCAAGAAGAAAGCTTCTCTCAAATGTATAATGGAATTGGAGAACCACAGCAAACTACAGCACCTGGCTTTTGGCCTTGGAGTTCAGATCAAAACTCCCATTTTCATTAA 858 48.95 MASPHSFLFQSRPADRHDYVSSTSFNTIPTCPPQHYYHDGVVPLMMKRSMSFSGVENGCEDGNGEEGLSDDGSALGEKKKRLSMEQVKALEKSFEVGNKLEPERKLQLAKALGMQPRQIAIWFQNRRARWKTKQLERDYDVLKKQFEALKVDNDVLQAQNTKLHAQLIALKIKDSGEAAGGGATVNLKKENEHGWSSDNSCDINLDISRTQAPITTNNNGGRSSACSEPGIRDLFPSAAFRSAAITQLLNQEESFSQMYNGIGEPQQTTAPGFWPWSSDQNSHFH 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34074679 34077744 - Sed0010551.1 Sed11g1992 730638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1992 285 Coils Coil 125 159 - -
Sed11g1992 285 MobiDBLite consensus disorder prediction 264 285 - -
Sed11g1992 285 SUPERFAMILY Homeodomain-like 71 135 IPR009057 -
Sed11g1992 285 Gene3D - 71 139 - -
Sed11g1992 285 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677(InterPro)
Sed11g1992 285 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677(InterPro)
Sed11g1992 285 SMART HOX_1 76 137 IPR001356 GO:0003677(InterPro)
Sed11g1992 285 Pfam Homeobox associated leucine zipper 133 171 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g1992 285 Pfam Homeodomain 78 131 IPR001356 GO:0003677(InterPro)
Sed11g1992 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 206 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed11g1992 285 CDD homeodomain 78 134 IPR001356 GO:0003677(InterPro)
Sed11g1992 285 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed11g1992 285 FunFam Homeobox-leucine zipper protein ATHB-13 70 137 - -
Sed11g1992 285 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0692 Sed-Chr4:5541415 Sed11g1992 Sed-Chr11:34074679 3.70E-47 dispersed
Sed10g0840 Sed-Chr10:6194141 Sed11g1992 Sed-Chr11:34074679 1.30E-26 dispersed
Sed11g1931 Sed-Chr11:33725685 Sed11g1992 Sed-Chr11:34074679 1.60E-20 dispersed
Sed11g1992 Sed-Chr11:34074679 Sed14g0987 Sed-Chr14:19203953 2.90E-25 dispersed
Sed11g1992 Sed-Chr11:34074679 Sed03g0193 Sed-Chr3:1194664 7.80E-111 wgd
Sed11g1992 Sed-Chr11:34074679 Sed06g1545 Sed-Chr6:40270934 1.50E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40028 PF00046 Homeodomain 1.10E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1992 K09338 - csv:101212093 444.121