Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g1995 ATGGCCTCCTCCGAGGTTTCAATCAAAGCCAATTCTGCCTCTGCATTTGATGGTCATGCTGATTCTACCAAAGCCCCCTCTGATTCATCCAACGCTCTCTCTGCCAGGGATGCCGATACTGCGCTCTATACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTGCTGTCCCTCGTGAAAATGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAGCAGGTGGAGGCATCAACTAATCAAGTGGCAGACCAACAAATGCCCGTTTATAACCTTCCATCCAAGATCCTCTGCCGCGTTATTCATGTGCACTTAAAGGCTGAGCCGGACACAGATGAGGTTTTCGCACAAATAACTTTGCTTCCAGAGTCTAATCAAGACGAGAATGCTGTGGAAAAGGAGCCCCCTCCTCCTCCCCCACGGAGATTTCATGTGCATTCTTTTTGCAAGACTCTGACAGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGTCATGCTGATGAATGTCTTCCTCCACTGGACATGTCTCGACAGCCTCCTACCCAGGAATTGGTTGCAAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATCTTTCGAGGACAACCACGTAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTTGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTTCGGCGTGCCATGAGACAACATGGCAACGTTCCCTCATCGGTCATATCTAGCCATAGCATGCATCTTGGCGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACGAGGTTCACTGTCTACTATAAGCCCAGGACAAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGATTCAAGATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACGGGTACCATCATTGGGTGTGAAGATGCTGATGCCACAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACTTCTACTATATCTCGTCCGGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCCCTTCCAATGACTAGGCCTAAGAGGCCTCGATCAAATATGGTGCCTACATCCCCTGATTCCTCTGTTACGCGAGAAGGCTCATCAAGAATGACTGTAGACCCATCGCCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTTAGAGGAAATTTTATTGATGGCAATGAGCCTGATGCTGCTGAAAAACCTACTATGTGGCCTCCCTCTCGAGATGATGAGAAGACTGAAGTGGTTTCTACATCTAAGAAACATGGAGCAGATGACTGGATACCTCTAGGAAGGGGTGAGCCAACCTACACTGATCTCCTGTCAGGTTTTGGAGCTAATATTGATTCATCCCGCAGTATCCAAGCTTCCATGGGAGATTCAGCTATAGTAACTGCAAATTCTGTCAGAAAGCATGCAATGGATCAAGATGGAAAGTTTAACTTCTTTGGTGGTAACTCATGGTCTGTTTTGCCTTCCAGTCTGTCACTCAACCTGGTCGCCTCTAGTCAGAAGGTTCATATTCAGGCTGGTGACTTACCTTATCAAGTTAGAGGAAATGCTACCTTTAATGGCTTTGGTGATCATTCCATGGCCCACTGTTATAGAATTGAACAACCTAATGGAAACTGGTTGATGCCTCCACCTCCATCTCATCTTGATTATCCAGTTCATTCATCTGAACTGATGTCAAAGCCCATGTTATTTCAGAACCAAGATATTCTGAAATCCAAAGATGGAAACTGTAAGCTTTTTGGAATCTCACTCATTAAAAATCCTGCTATTTCAGACCCTACAGGATTCAATAGAAATATGATGAACGAGGCAGATGTTATGCATCCTACTGTAAATCAGATCCATACGAACGAGTCTGACCTCAAGTCAGAACTCTCTAGGGGTTCGAAGTTGGCTGATAAATCCTTTGCCACCAACGAGGCTGATAAGTCGCCGCAAACATGCACACCAAACTCACAAGATGCACAGAACAAATCACAGGGTTCAACAAGGAGCTGTACAAAGGTTCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTAAGCAAGTTCAACAATTATGATGAATTGGTTGCTGAATTGGACCATCTGTTTGAATTTGGCGGCGAGCTGCTGCTACCTAAAAAGAATTGGCTTATTGTATATACGGATAATGAAGGTGATATGATGCTTGTTGGAGACGACCCCTGGCAGGAGTTTTGTGGTATGGTCCGAAAGATTTGTATCTATACAAAAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAACTTTAAAAGGTGACGAAAATCCATCTGTTGAAGGGGAAGAAGCCAAAGAGACCAAAAGTCAGGCAGTGCCATCAATGTCAGCACCACCAGAGAGTTCTTAG 2550 45.96 MASSEVSIKANSASAFDGHADSTKAPSDSSNALSARDADTALYTELWNACAGPLVAVPRENERVFYFPQGHIEQVEASTNQVADQQMPVYNLPSKILCRVIHVHLKAEPDTDEVFAQITLLPESNQDENAVEKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTRFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADATRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVTREGSSRMTVDPSPASAFTRVLQGQEFSTFRGNFIDGNEPDAAEKPTMWPPSRDDEKTEVVSTSKKHGADDWIPLGRGEPTYTDLLSGFGANIDSSRSIQASMGDSAIVTANSVRKHAMDQDGKFNFFGGNSWSVLPSSLSLNLVASSQKVHIQAGDLPYQVRGNATFNGFGDHSMAHCYRIEQPNGNWLMPPPPSHLDYPVHSSELMSKPMLFQNQDILKSKDGNCKLFGISLIKNPAISDPTGFNRNMMNEADVMHPTVNQIHTNESDLKSELSRGSKLADKSFATNEADKSPQTCTPNSQDAQNKSQGSTRSCTKVHKQGIALGRSVDLSKFNNYDELVAELDHLFEFGGELLLPKKNWLIVYTDNEGDMMLVGDDPWQEFCGMVRKICIYTKEEVQKMNPGSLTLKGDENPSVEGEEAKETKSQAVPSMSAPPESS 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34122701 34129698 + Sed0027970.1 Sed11g1995 730641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g1995 849 Pfam AUX/IAA family 693 812 IPR033389 -
Sed11g1995 849 CDD B3_DNA 146 248 IPR003340 GO:0003677(InterPro)
Sed11g1995 849 SUPERFAMILY DNA-binding pseudobarrel domain 145 277 IPR015300 -
Sed11g1995 849 FunFam Auxin response factor 718 812 - -
Sed11g1995 849 MobiDBLite consensus disorder prediction 812 849 - -
Sed11g1995 849 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677(InterPro)
Sed11g1995 849 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677(InterPro)
Sed11g1995 849 ProSiteProfiles PB1 domain profile. 723 816 IPR053793 -
Sed11g1995 849 MobiDBLite consensus disorder prediction 698 724 - -
Sed11g1995 849 MobiDBLite consensus disorder prediction 440 464 - -
Sed11g1995 849 MobiDBLite consensus disorder prediction 696 724 - -
Sed11g1995 849 Gene3D - 719 812 - -
Sed11g1995 849 MobiDBLite consensus disorder prediction 382 422 - -
Sed11g1995 849 Pfam Auxin response factor 274 356 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed11g1995 849 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 813 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed11g1995 849 MobiDBLite consensus disorder prediction 397 422 - -
Sed11g1995 849 MobiDBLite consensus disorder prediction 1 32 - -
Sed11g1995 849 SUPERFAMILY CAD & PB1 domains 721 800 - -
Sed11g1995 849 FunFam Auxin response factor 311 383 - -
Sed11g1995 849 Gene3D - 145 250 IPR015300 -
Sed11g1995 849 Gene3D - 311 381 - -
Sed11g1995 849 SMART B3_2 148 250 IPR003340 GO:0003677(InterPro)
Sed11g1995 849 FunFam Auxin response factor 146 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2864 Sed-Chr5:39757193 Sed11g1995 Sed-Chr11:34122701 3.50E-132 dispersed
Sed09g0530 Sed-Chr9:5366658 Sed11g1995 Sed-Chr11:34122701 1.10E-152 dispersed
Sed11g1995 Sed-Chr11:34122701 Sed11g1997 Sed-Chr11:34122701 0.00E+00 dispersed
Sed11g1995 Sed-Chr11:34122701 Sed11g1996 Sed-Chr11:34122701 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40030 PF02362 B3 3.40E-21 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g1995 K14486 - csv:101206845 1470.68