Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g2000 | ATGGCGGAAGCAGTAACAGAGCCGAAGAAATCACTGCACGACCCACAAAAGAAGAAGGAACAGAGCCTCCCCTTTCACAAGCTCTTCTCTTTTGCCGACAAATTCGATTACTTTCTCATGATCCTCGGCTCGATAGGCGCCGTCATCCACGGCTCTTCCATGCCTGTCTTCTTCCTCCTTTTCGGCCAAATGGTTAACGGATTCGGCCAAAACCAATCCAATTTCCACAAAATGACCTCTGAAGTCTCCAAGTATGCTCTGTTTTTTGTCTACTTGGGTCTCATTGTTTGCTTCTCCTCTTACGCCGAGATCGCTTGTTGGATGTACACCGGGGAGAGGCAAGTGAGTACATTGAGGAAGAAGTATTTAGAAGCTGTGTTGAAACAAGATGTTGGATTTTTCGACACCGATGCGAGAACCGGGGATGTTGTGTTCAGTGTCTCAACTGATACTCTTCTTGTTCAAGATGCAATCAGCGAGAAGGTGGGGAACTTCATTCACTATCTCTCAACCTTTTTGGCTGGATTGGTTGTGGGTTTTCTGTCAGCTTGGAGATTAGCACTTTTGAGTATTGCTGTAATTCCAGGAATTGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGACTCACTTCTAAGAGTAGAGAATCTTATGCTAATGCTGGAATCATTGCAGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGAGAAAGCAAGGCTTTGAATTCATATTCAGATTTGATTCAGAATACTTTGAAAATTGGATACAAGGCTGGGATGGCTAAGGGGTTGGGCCTTGGTTGTACTTATGGTATTGCTTGTATGTCTTGGGCTCTTGTCTTTTGGTACGCCGGCGTCTTCATCCGTAACGGCCAGACCGATGGTGGGAAGGCCTTCACTGCTATATTCTCTGCTATTGTCGGCGGCATGAGTTTGGGGCAGTCATTTTCTAATTTGGGAGCATTTAGCAAAGGAAAAGCTGCAGGGTACAAATTGATGGAGATAATTAACCAAAAACCTTCAATTATTCAAGACCCATTAGATGGGAAGTGTTTGGGTGAAGTTAATGGTAATATTGAGTTCAAAGATGTCACCTTTAGCTACCCTTCAAGGCCGGATGTGATGATCTTTAGGGGTTTCTCCATTTTCTTCCCGGCCGGGAAGACGGTCGCTGTCGTTGGCGGTAGTGGTTCCGGGAAAAGTACTGTGGTCTCTCTCATTGAAAGATTCTATGATCCAATTCAAGGGCAGGTTCTGTTGGACAATGTGGATATAAAGACATTGCAATTGAAATGGCTGCGTGATCAAATAGGGTTAGTGAACCAAGAACCAGCTCTATTTGCAACTACCATATATGAAAACATTCTCTATGGAAAACCCGACGCCACGATAGCGGAGGTCGAAGCGGCGGCGGCTGCAGCAAATGCTCATACTTTTATTACATTGCTCCCCAATGGCTACAACACCCAGGTTGGGGAAAGAGGATTACAACTCTCTGGTGGCCAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAATCCCAAGATCCTTCTCCTCGATGAAGCCACCAGCGCCCTTGATGCAGGATCTGAGAGCGTAGTTCAAGAAGCGTTAGACCGATTAATGGTTGGAAGAACAACAGTAGTCGTTGCACATCGATTATCGACCATACGAAATGTCGATTCGATTGCAGTGTTACAACAAGGGCAGGTCGTTGAAACAGGAACACACGAAGAACTCATCGCCAAATCCGGAGCATACTCCTCATTGATTCGCTTCCAAGAAACGGTTCGAAATAGAGAATTCTCCAACCCATCCACCCGACGAACACGATCTTCGCGACTGAGCCATTCTTTGTCGACAAAATCGTTAAGCCTTCGCTCTGGCAGCCTTAGAAATTTGAGCTATTCGTACAGCACTGGCGCCGACGGAAGAATCGAAATGGTTTCAAATGCCGAAACCGACCGAAAAAATCCAGCCCCAGATGGTTATTTCATTCGTCTTCTTAAACTCAATGGCCCGGAATGGCCGTATTCGATAATGGGCGCTGTTGGATCAATTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTTATGAGCAACATGATCGAAGTCTTCTATTACAAAAACACATCCGCCATGGAAAGGAAAATCAAGGAATTTGTATTCATATACATCGGAATTGGCGTTTACGCAGTGGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAGAATCTCACCACCAGAGTAAGAAGAATGATGCTCGCAGCCATTTTGAGAAATGAAGTTGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAAACTCTCAACTGATGCAGCTGATGTGAAATCCGCCATAGCTGAAAGAATATCAGTGATTCTGCAAAACATGACTTCACTTTTCACTTCATTCATAGTTGCATTCATTATTGAATGGAGAGTTTCACTTCTCATCCTTGCAGCCTTCCCTCTATTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGACACTGCAAAGGCCCATGCCAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAACATCAGAACTGTGGCTGCCTTCAATGCTCAAGGCAAGATCCTTTCGCTGTTCCGCCACGAGCTTCATGTCCCGCAGCAGCAGAGCCTGCGTCGGAGCCTTACCGCGGGGATTCTCTTTGGCATTTCGCAGCTCGCTCTGTATGCTTCGGAAGCTCTCGTGCTTTGGTACGGTGTTCATTTGGTTAGCAATGGCGTGTCGACATTCTCCAAAGTGATTAAGGTCTTTGTTGTGTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCGTTCGGGGCGGCGAGTCCATTGGTTCGGTTTTCTCCATTCTTGATCGCTCGACGAGAATTGACCCTGATGATCCTGAGGCTGAGACTGTCGAGAAGCTTCGTGGGGAAATCGAACTTCGACATGTTGATTTCGCGTACCCGTCTAGACCTGATGTCATGGTGTTTAAGGATTTCAATCTTAGGATCAGGGCTGGTCAGAGCCAGGCTTTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCTGTGATTGCCTTGATTGAAAGATTCTATGATCCGATCGTCGGGAAAGTTATGATCGACGGGAAGGACATTCGTCGACTGAATTTGCAATCGTTGAGGCTGAAAATCGGGTTGGTACAGCAAGAGCCAGCCTTGTTTGCAGCTAGTATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACAGAAGCTGAAGTGATAGAGGCAGCAAGAGCAGCCAATGTGCATAGCTTTGTGAGTGGACTGCCTGATGGCTACAAGACACCAGTTGGGGAAAGGGGAGTTCAGCTTTCTGGTGGCCAAAAACAGCGCATTGCTATTGCTCGGGCTGTTCTCAAGGACCCCGCAATCCTCCTCCTCGATGAAGCCACGAGCGCCCTCGACGCCGAGTCAGAGTGCGTGCTACAAGAGGCTCTGGAAAGGCTGATGAGAGGCCGAACCACCGTGCTTGTGGCACATCGGTTGTCGACGATCAGGGGTGTCCACAACATCGGTGTGGTGCAAGATGGACGCATTGTGGAGCAAGGCAGTCATAGCGAGCTGCTAAGCCGAGCCGATGGGGCTTACTCAAGGCTCTTGCAGTTGCAACACCAACACATATGA | 3756 | 46.81 | MAEAVTEPKKSLHDPQKKKEQSLPFHKLFSFADKFDYFLMILGSIGAVIHGSSMPVFFLLFGQMVNGFGQNQSNFHKMTSEVSKYALFFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFLSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDLIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPSIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRGFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPIQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATIAEVEAAAAAANAHTFITLLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESVVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVLQQGQVVETGTHEELIAKSGAYSSLIRFQETVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSILSGFISPTFAIVMSNMIEVFYYKNTSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAKLSTDAADVKSAIAERISVILQNMTSLFTSFIVAFIIEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQGKILSLFRHELHVPQQQSLRRSLTAGILFGISQLALYASEALVLWYGVHLVSNGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSVFSILDRSTRIDPDDPEAETVEKLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHSFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVHNIGVVQDGRIVEQGSHSELLSRADGAYSRLLQLQHQHI | 1251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 34177996 | 34184996 | - | Sed0012935.1 | Sed11g2000 | 730646 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g2000 | 1251 | Gene3D | ABC transporter type 1, transmembrane domain | 978 | 1249 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed11g2000 | 1251 | ProSitePatterns | ABC transporters family signature. | 1148 | 1162 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | SUPERFAMILY | ABC transporter transmembrane region | 674 | 988 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed11g2000 | 1251 | FunFam | ABC transporter B family member 19 | 999 | 1248 | - | - | |
| Sed11g2000 | 1251 | Pfam | ABC transporter transmembrane region | 40 | 313 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed11g2000 | 1251 | Pfam | ABC transporter transmembrane region | 687 | 957 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed11g2000 | 1251 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 676 | 992 | - | - | |
| Sed11g2000 | 1251 | CDD | ABC_MTABC3_MDL1_MDL2 | 1009 | 1247 | - | - | |
| Sed11g2000 | 1251 | Pfam | ABC transporter | 385 | 531 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 41 | 329 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed11g2000 | 1251 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1011 | 1245 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 358 | 601 | IPR027417 | - | |
| Sed11g2000 | 1251 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 687 | 974 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed11g2000 | 1251 | Pfam | ABC transporter | 1028 | 1176 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 364 | 600 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | Gene3D | ABC transporter type 1, transmembrane domain | 27 | 976 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed11g2000 | 1251 | SMART | AAA_5 | 1036 | 1208 | IPR003593 | GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | SMART | AAA_5 | 391 | 583 | IPR003593 | GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 999 | 1247 | IPR027417 | - | |
| Sed11g2000 | 1251 | FunFam | ABC transporter B family member 19 | 354 | 602 | - | - | |
| Sed11g2000 | 1251 | FunFam | ABC transporter B family member 1 | 666 | 975 | - | - | |
| Sed11g2000 | 1251 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 40 | 337 | - | - | |
| Sed11g2000 | 1251 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 350 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed11g2000 | 1251 | Gene3D | - | 999 | 1248 | IPR027417 | - | |
| Sed11g2000 | 1251 | Gene3D | - | 354 | 602 | IPR027417 | - | |
| Sed11g2000 | 1251 | ProSitePatterns | ABC transporters family signature. | 503 | 517 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed11g2000 | 1251 | PANTHER | ABC TRANSPORTER B FAMILY | 8 | 622 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Sed11g2000 | 1251 | FunFam | ABC transporter B family member 1 | 27 | 361 | - | - | |
| Sed11g2000 | 1251 | CDD | ABC_MTABC3_MDL1_MDL2 | 364 | 601 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g4128 | Sed-Chr1:70081162 | Sed11g2000 | Sed-Chr11:34177996 | 0.00E+00 | dispersed | |
| Sed04g1380 | Sed-Chr4:28162001 | Sed11g2000 | Sed-Chr11:34177996 | 0.00E+00 | dispersed | |
| Sed05g0268 | Sed-Chr5:1618835 | Sed11g2000 | Sed-Chr11:34177996 | 0.00E+00 | dispersed | |
| Sed09g1635 | Sed-Chr9:39825110 | Sed11g2000 | Sed-Chr11:34177996 | 8.80E-270 | dispersed | |
| Sed09g1636 | Sed-Chr9:39826455 | Sed11g2000 | Sed-Chr11:34177996 | 8.80E-270 | dispersed | |
| Sed11g1963 | Sed-Chr11:33912684 | Sed11g2000 | Sed-Chr11:34177996 | 6.30E-279 | dispersed | |
| Sed11g2000 | Sed-Chr11:34177996 | Sed14g1548 | Sed-Chr14:23703158 | 7.70E-304 | dispersed | |
| Sed05g3721 | Sed-Chr5:45160328 | Sed11g2000 | Sed-Chr11:34177996 | 5.70E-267 | transposed | |
| Sed07g0276 | Sed-Chr7:2205607 | Sed11g2000 | Sed-Chr11:34177996 | 2.90E-07 | transposed | |
| Sed08g2129 | Sed-Chr8:35257851 | Sed11g2000 | Sed-Chr11:34177996 | 7.80E-95 | transposed | |
| Sed11g2000 | Sed-Chr11:34177996 | Sed03g0201 | Sed-Chr3:1247429 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g2000 | K05658 | - | csv:101212585 | 2217.19 |