Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2000 ATGGCGGAAGCAGTAACAGAGCCGAAGAAATCACTGCACGACCCACAAAAGAAGAAGGAACAGAGCCTCCCCTTTCACAAGCTCTTCTCTTTTGCCGACAAATTCGATTACTTTCTCATGATCCTCGGCTCGATAGGCGCCGTCATCCACGGCTCTTCCATGCCTGTCTTCTTCCTCCTTTTCGGCCAAATGGTTAACGGATTCGGCCAAAACCAATCCAATTTCCACAAAATGACCTCTGAAGTCTCCAAGTATGCTCTGTTTTTTGTCTACTTGGGTCTCATTGTTTGCTTCTCCTCTTACGCCGAGATCGCTTGTTGGATGTACACCGGGGAGAGGCAAGTGAGTACATTGAGGAAGAAGTATTTAGAAGCTGTGTTGAAACAAGATGTTGGATTTTTCGACACCGATGCGAGAACCGGGGATGTTGTGTTCAGTGTCTCAACTGATACTCTTCTTGTTCAAGATGCAATCAGCGAGAAGGTGGGGAACTTCATTCACTATCTCTCAACCTTTTTGGCTGGATTGGTTGTGGGTTTTCTGTCAGCTTGGAGATTAGCACTTTTGAGTATTGCTGTAATTCCAGGAATTGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGACTCACTTCTAAGAGTAGAGAATCTTATGCTAATGCTGGAATCATTGCAGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGAGAAAGCAAGGCTTTGAATTCATATTCAGATTTGATTCAGAATACTTTGAAAATTGGATACAAGGCTGGGATGGCTAAGGGGTTGGGCCTTGGTTGTACTTATGGTATTGCTTGTATGTCTTGGGCTCTTGTCTTTTGGTACGCCGGCGTCTTCATCCGTAACGGCCAGACCGATGGTGGGAAGGCCTTCACTGCTATATTCTCTGCTATTGTCGGCGGCATGAGTTTGGGGCAGTCATTTTCTAATTTGGGAGCATTTAGCAAAGGAAAAGCTGCAGGGTACAAATTGATGGAGATAATTAACCAAAAACCTTCAATTATTCAAGACCCATTAGATGGGAAGTGTTTGGGTGAAGTTAATGGTAATATTGAGTTCAAAGATGTCACCTTTAGCTACCCTTCAAGGCCGGATGTGATGATCTTTAGGGGTTTCTCCATTTTCTTCCCGGCCGGGAAGACGGTCGCTGTCGTTGGCGGTAGTGGTTCCGGGAAAAGTACTGTGGTCTCTCTCATTGAAAGATTCTATGATCCAATTCAAGGGCAGGTTCTGTTGGACAATGTGGATATAAAGACATTGCAATTGAAATGGCTGCGTGATCAAATAGGGTTAGTGAACCAAGAACCAGCTCTATTTGCAACTACCATATATGAAAACATTCTCTATGGAAAACCCGACGCCACGATAGCGGAGGTCGAAGCGGCGGCGGCTGCAGCAAATGCTCATACTTTTATTACATTGCTCCCCAATGGCTACAACACCCAGGTTGGGGAAAGAGGATTACAACTCTCTGGTGGCCAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAATCCCAAGATCCTTCTCCTCGATGAAGCCACCAGCGCCCTTGATGCAGGATCTGAGAGCGTAGTTCAAGAAGCGTTAGACCGATTAATGGTTGGAAGAACAACAGTAGTCGTTGCACATCGATTATCGACCATACGAAATGTCGATTCGATTGCAGTGTTACAACAAGGGCAGGTCGTTGAAACAGGAACACACGAAGAACTCATCGCCAAATCCGGAGCATACTCCTCATTGATTCGCTTCCAAGAAACGGTTCGAAATAGAGAATTCTCCAACCCATCCACCCGACGAACACGATCTTCGCGACTGAGCCATTCTTTGTCGACAAAATCGTTAAGCCTTCGCTCTGGCAGCCTTAGAAATTTGAGCTATTCGTACAGCACTGGCGCCGACGGAAGAATCGAAATGGTTTCAAATGCCGAAACCGACCGAAAAAATCCAGCCCCAGATGGTTATTTCATTCGTCTTCTTAAACTCAATGGCCCGGAATGGCCGTATTCGATAATGGGCGCTGTTGGATCAATTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTTATGAGCAACATGATCGAAGTCTTCTATTACAAAAACACATCCGCCATGGAAAGGAAAATCAAGGAATTTGTATTCATATACATCGGAATTGGCGTTTACGCAGTGGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAGAATCTCACCACCAGAGTAAGAAGAATGATGCTCGCAGCCATTTTGAGAAATGAAGTTGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAAACTCTCAACTGATGCAGCTGATGTGAAATCCGCCATAGCTGAAAGAATATCAGTGATTCTGCAAAACATGACTTCACTTTTCACTTCATTCATAGTTGCATTCATTATTGAATGGAGAGTTTCACTTCTCATCCTTGCAGCCTTCCCTCTATTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGACACTGCAAAGGCCCATGCCAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAACATCAGAACTGTGGCTGCCTTCAATGCTCAAGGCAAGATCCTTTCGCTGTTCCGCCACGAGCTTCATGTCCCGCAGCAGCAGAGCCTGCGTCGGAGCCTTACCGCGGGGATTCTCTTTGGCATTTCGCAGCTCGCTCTGTATGCTTCGGAAGCTCTCGTGCTTTGGTACGGTGTTCATTTGGTTAGCAATGGCGTGTCGACATTCTCCAAAGTGATTAAGGTCTTTGTTGTGTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCGTTCGGGGCGGCGAGTCCATTGGTTCGGTTTTCTCCATTCTTGATCGCTCGACGAGAATTGACCCTGATGATCCTGAGGCTGAGACTGTCGAGAAGCTTCGTGGGGAAATCGAACTTCGACATGTTGATTTCGCGTACCCGTCTAGACCTGATGTCATGGTGTTTAAGGATTTCAATCTTAGGATCAGGGCTGGTCAGAGCCAGGCTTTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCTGTGATTGCCTTGATTGAAAGATTCTATGATCCGATCGTCGGGAAAGTTATGATCGACGGGAAGGACATTCGTCGACTGAATTTGCAATCGTTGAGGCTGAAAATCGGGTTGGTACAGCAAGAGCCAGCCTTGTTTGCAGCTAGTATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACAGAAGCTGAAGTGATAGAGGCAGCAAGAGCAGCCAATGTGCATAGCTTTGTGAGTGGACTGCCTGATGGCTACAAGACACCAGTTGGGGAAAGGGGAGTTCAGCTTTCTGGTGGCCAAAAACAGCGCATTGCTATTGCTCGGGCTGTTCTCAAGGACCCCGCAATCCTCCTCCTCGATGAAGCCACGAGCGCCCTCGACGCCGAGTCAGAGTGCGTGCTACAAGAGGCTCTGGAAAGGCTGATGAGAGGCCGAACCACCGTGCTTGTGGCACATCGGTTGTCGACGATCAGGGGTGTCCACAACATCGGTGTGGTGCAAGATGGACGCATTGTGGAGCAAGGCAGTCATAGCGAGCTGCTAAGCCGAGCCGATGGGGCTTACTCAAGGCTCTTGCAGTTGCAACACCAACACATATGA 3756 46.81 MAEAVTEPKKSLHDPQKKKEQSLPFHKLFSFADKFDYFLMILGSIGAVIHGSSMPVFFLLFGQMVNGFGQNQSNFHKMTSEVSKYALFFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFLSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDLIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPSIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRGFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPIQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATIAEVEAAAAAANAHTFITLLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESVVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVLQQGQVVETGTHEELIAKSGAYSSLIRFQETVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSILSGFISPTFAIVMSNMIEVFYYKNTSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAKLSTDAADVKSAIAERISVILQNMTSLFTSFIVAFIIEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQGKILSLFRHELHVPQQQSLRRSLTAGILFGISQLALYASEALVLWYGVHLVSNGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSVFSILDRSTRIDPDDPEAETVEKLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHSFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVHNIGVVQDGRIVEQGSHSELLSRADGAYSRLLQLQHQHI 1251
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 34177996 34184996 - Sed0012935.1 Sed11g2000 730646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2000 1251 Gene3D ABC transporter type 1, transmembrane domain 978 1249 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed11g2000 1251 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed11g2000 1251 SUPERFAMILY ABC transporter transmembrane region 674 988 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed11g2000 1251 FunFam ABC transporter B family member 19 999 1248 - -
Sed11g2000 1251 Pfam ABC transporter transmembrane region 40 313 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed11g2000 1251 Pfam ABC transporter transmembrane region 687 957 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed11g2000 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Sed11g2000 1251 CDD ABC_MTABC3_MDL1_MDL2 1009 1247 - -
Sed11g2000 1251 Pfam ABC transporter 385 531 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed11g2000 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed11g2000 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1245 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed11g2000 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 601 IPR027417 -
Sed11g2000 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 974 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed11g2000 1251 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed11g2000 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed11g2000 1251 Gene3D ABC transporter type 1, transmembrane domain 27 976 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed11g2000 1251 SMART AAA_5 1036 1208 IPR003593 GO:0016887(InterPro)
Sed11g2000 1251 SMART AAA_5 391 583 IPR003593 GO:0016887(InterPro)
Sed11g2000 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1247 IPR027417 -
Sed11g2000 1251 FunFam ABC transporter B family member 19 354 602 - -
Sed11g2000 1251 FunFam ABC transporter B family member 1 666 975 - -
Sed11g2000 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Sed11g2000 1251 SUPERFAMILY ABC transporter transmembrane region 27 350 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed11g2000 1251 Gene3D - 999 1248 IPR027417 -
Sed11g2000 1251 Gene3D - 354 602 IPR027417 -
Sed11g2000 1251 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed11g2000 1251 PANTHER ABC TRANSPORTER B FAMILY 8 622 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Sed11g2000 1251 FunFam ABC transporter B family member 1 27 361 - -
Sed11g2000 1251 CDD ABC_MTABC3_MDL1_MDL2 364 601 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4128 Sed-Chr1:70081162 Sed11g2000 Sed-Chr11:34177996 0.00E+00 dispersed
Sed04g1380 Sed-Chr4:28162001 Sed11g2000 Sed-Chr11:34177996 0.00E+00 dispersed
Sed05g0268 Sed-Chr5:1618835 Sed11g2000 Sed-Chr11:34177996 0.00E+00 dispersed
Sed09g1635 Sed-Chr9:39825110 Sed11g2000 Sed-Chr11:34177996 8.80E-270 dispersed
Sed09g1636 Sed-Chr9:39826455 Sed11g2000 Sed-Chr11:34177996 8.80E-270 dispersed
Sed11g1963 Sed-Chr11:33912684 Sed11g2000 Sed-Chr11:34177996 6.30E-279 dispersed
Sed11g2000 Sed-Chr11:34177996 Sed14g1548 Sed-Chr14:23703158 7.70E-304 dispersed
Sed05g3721 Sed-Chr5:45160328 Sed11g2000 Sed-Chr11:34177996 5.70E-267 transposed
Sed07g0276 Sed-Chr7:2205607 Sed11g2000 Sed-Chr11:34177996 2.90E-07 transposed
Sed08g2129 Sed-Chr8:35257851 Sed11g2000 Sed-Chr11:34177996 7.80E-95 transposed
Sed11g2000 Sed-Chr11:34177996 Sed03g0201 Sed-Chr3:1247429 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2000 K05658 - csv:101212585 2217.19