Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2008 ATGCAGGGGAATTACCCAATGGCTTCACAGAGGATAATTCTGGTTTTAATTAGTCTTTTTTTAATGGGATCTTGTGTTAATGGTGATTATGGTGGTTGGATCAGTGCTCATGCCACTTTCTATGGAGGAAGTGATGCTTCTGGGACAATGGGGGGAGCTTGTGGATATGGGAATTTGTACGGCCAAGGGTATGGCACGAACACCGCGGCATTGAGCACCGCGCTGTTCGATAATGGACTGAGCTGCGGCGCTTGCTTTGAGCTGCGGTGTGTCAATGACCCGAAGTGGTGTATTCCAGGCACTATTGTTGTCACTGCCACTAATTTTTGCCCTCCCGGTGGCTGTTGTGACCCTCCTAACCACCATTTTGATCTTTCTCAGCCTATCTTCGAACACATTGCTCAGTATCGTGCCGGGATCATCCCGGTCGCCTATCGAAGAGTGAGGTGCAGAAGAAGTGGAGGAATAAGGTTCACAATCAACGGCCATTCATATTTCAACTTGGTTCTCATCACGAACGTCGGGGGCGCAGGCGATGTGCACGCGGTGGCGATAAAGGGTTCAAAGAGTAACCGATGGCAATACATGTCCAGAAATTGGGGCCAAAACTGGCAGTCAAATTCATATCTCAACGGCCAAAGCCTCTCTTTTTTGGTTACTGCCAGCGACGGCCGAAAAGTTCTCTCCTACAACGTCGCTCCCTCCGGCTGGTCTTTCGGCCAAACCTACGTCGGCGGCCAGTTTCGCTATTAA 753 50.07 MQGNYPMASQRIILVLISLFLMGSCVNGDYGGWISAHATFYGGSDASGTMGGACGYGNLYGQGYGTNTAALSTALFDNGLSCGACFELRCVNDPKWCIPGTIVVTATNFCPPGGCCDPPNHHFDLSQPIFEHIAQYRAGIIPVAYRRVRCRRSGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSKSNRWQYMSRNWGQNWQSNSYLNGQSLSFLVTASDGRKVLSYNVAPSGWSFGQTYVGGQFRY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34240098 34242553 - Sed0006896.1 Sed11g2008 730654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2008 250 FunFam Expansin 155 248 - -
Sed11g2008 250 Gene3D - 23 151 IPR036908 -
Sed11g2008 250 CDD DPBB_EXPA_N 32 150 - -
Sed11g2008 250 PRINTS Expansin signature 154 166 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 113 130 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 130 143 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 166 187 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 Pfam Expansin C-terminal domain 156 234 IPR007117 -
Sed11g2008 250 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Sed11g2008 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 155 IPR007112 -
Sed11g2008 250 Pfam Lytic transglycolase 68 145 IPR009009 -
Sed11g2008 250 SUPERFAMILY Barwin-like endoglucanases 16 173 IPR036908 -
Sed11g2008 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 245 IPR007117 -
Sed11g2008 250 SMART dpbb_1 68 145 IPR007112 -
Sed11g2008 250 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Sed11g2008 250 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Sed11g2008 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Sed11g2008 250 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Sed11g2008 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Sed11g2008 250 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576(InterPro)
Sed11g2008 250 PANTHER EXPANSIN-A15 20 248 IPR002963 GO:0009664(InterPro)
Sed11g2008 250 Gene3D - 155 248 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2008 Sed-Chr11:34240098 Sed11g2112 Sed-Chr11:35050955 3.00E-98 dispersed
Sed11g2008 Sed-Chr11:34240098 Sed03g0216 Sed-Chr3:1374385 3.70E-125 wgd
Sed11g2008 Sed-Chr11:34240098 Sed08g2079 Sed-Chr8:34965760 4.90E-93 wgd
Sed11g2008 Sed-Chr11:34240098 Sed08g0227 Sed-Chr8:1292903 8.40E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2008 K20628 - csv:101220358 469.544