Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2032 ATGGCGAAGAAGGATGAGTCTGCAAGGGCTCCGCACCACCGTCCGACGATCACTCTGCCGCCGCGCCCTTCCATGGAATCCTTCTTCTCCGGCGGGTCCGCCGGAGTTAGCCCCGGCCCCATGACTCTCGTTTCCAGCTTCTTCGCCGACGGCGCCGTTGACTCCCCCTCCTTCTCCCAGCTTCTCGCCGGAGCCATGTGCTCTCCGATGGCCATGGGGTTTTTGGGAAGTGGGTCCACGCCCACTTACGGAGCCGCCTCGAAGCCGCTGAATATGGCGGCGGCGGCGGCGGCTCGGTCTCCTTTGTTCTCGGTCCCGCCCGGCCTCAGCCCCTCCGGGTTGCTTAATTCGCCCGGTTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCACAGGTTACTGCTCAAGCGGCAATGGCTCATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCGCCTGTGGAACCGTTGACACGAGATCCATCATTTACTCTTGATGAAGCATCTCAACTGTCAATACTACCCTCCACATCAGACACAACAAATCACATTGCAGAATCAATAGAAGTCTCTCATTCTGAGAGAAAGTACCAACCTCCTCTTTCCCATGCCTCTGATAAGCCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGCTGGTTAAGGGCAGTGAATATCCGCGAAGCTATTACAAATGCACGCATTCGAATTGCCCCGTTAAAAAGAAGATCGAGCGCTCGCCTGATGGTCAAATTACTGAAATTATTTACAAAGGCCAGCACAGCCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATCATAGTGAACCAATCGGTTGTACAAATTCTTTGTTGAAGCTTGAAAGTGGATCCCAAAACCAAGCTGGAATTTTAAACAAGTCAAGAGAAAATGTGCAATTAGGATCTAGTGACAGTGAAGAACAAGCCAATACAGAGATAGCAGAAGACAGAGATGATGATGGGCCAAATCGAAAGAGGCAGAACATTGATGCAGGGACATCTGGTGTTTCCCTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTAAGGTTGACCTGCTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACGAGTACTGGATGCAACGTCCGAAAGCATGTCGAGAGGTCTTCAACAGACGCGAAAGCTGTCGTAACTACATACGAAGGAAAACATAACCACGATGTCCCTGCAGCTAGAAACAGCAGCCACCACACGGCCAGCAATACTGTGCCCCAGATCAAACCACATAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAACTAACGATCAGAGACCTGCCGTTTTGCGTCTTAAAGAAGAGAAAATCACCGTGTGA 1485 49.56 MAKKDESARAPHHRPTITLPPRPSMESFFSGGSAGVSPGPMTLVSSFFADGAVDSPSFSQLLAGAMCSPMAMGFLGSGSTPTYGAASKPLNMAAAAAARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAAMAHSHMHMQQAEYQHSSVPAPVEPLTRDPSFTLDEASQLSILPSTSDTTNHIAESIEVSHSERKYQPPLSHASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHSNCPVKKKIERSPDGQITEIIYKGQHSHEPPPANKRARDHSEPIGCTNSLLKLESGSQNQAGILNKSRENVQLGSSDSEEQANTEIAEDRDDDGPNRKRQNIDAGTSGVSLSHKTLTEPKIIVQTRSKVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCNVRKHVERSSTDAKAVVTTYEGKHNHDVPAARNSSHHTASNTVPQIKPHKVVAQKHPLLKEMEFGTNDQRPAVLRLKEEKITV 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34377014 34381446 - Sed0010750.1 Sed11g2032 730678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2032 494 MobiDBLite consensus disorder prediction 316 359 - -
Sed11g2032 494 FunFam WRKY transcription factor 57 366 440 - -
Sed11g2032 494 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 146 459 IPR044810 GO:0003700(InterPro)
Sed11g2032 494 MobiDBLite consensus disorder prediction 272 291 - -
Sed11g2032 494 SUPERFAMILY WRKY DNA-binding domain 217 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 SMART WRKY_cls 380 439 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 SMART WRKY_cls 220 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 ProSiteProfiles WRKY domain profile. 215 279 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 SUPERFAMILY WRKY DNA-binding domain 372 440 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 ProSiteProfiles WRKY domain profile. 375 440 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 MobiDBLite consensus disorder prediction 200 225 - -
Sed11g2032 494 MobiDBLite consensus disorder prediction 1 32 - -
Sed11g2032 494 Gene3D WRKY domain 212 280 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 Gene3D WRKY domain 365 441 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 Pfam WRKY DNA -binding domain 381 438 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed11g2032 494 FunFam WRKY transcription factor 208 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1204 Sed-Chr1:8994775 Sed11g2032 Sed-Chr11:34377014 5.60E-68 dispersed
Sed03g0238 Sed-Chr3:1473995 Sed11g2032 Sed-Chr11:34377014 1.80E-174 dispersed
Sed07g1962 Sed-Chr7:34269019 Sed11g2032 Sed-Chr11:34377014 8.00E-108 dispersed
Sed08g0583 Sed-Chr8:3970225 Sed11g2032 Sed-Chr11:34377014 9.70E-41 dispersed
Sed08g2870 Sed-Chr8:39875708 Sed11g2032 Sed-Chr11:34377014 1.80E-66 dispersed
Sed11g2032 Sed-Chr11:34377014 Sed12g0015 Sed-Chr12:102659 1.10E-24 dispersed
Sed11g2032 Sed-Chr11:34377014 Sed11g2033 Sed-Chr11:34377014 5.40E-285 tandem
Sed11g2032 Sed-Chr11:34377014 Sed03g0237 Sed-Chr3:1472733 3.00E-227 wgd
Sed11g2032 Sed-Chr11:34377014 Sed06g1497 Sed-Chr6:39672743 8.00E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40039 PF03106 WRKY 3.90E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2032 - - - 0.0