Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2035 ATGTGGACCGAGCCAATTCGACCAACCACCCCTCCGCCGCCGGATTCCGAGGACACAACCTCCTCCGCCGGCGCCGTGGAGTGCTACGCGTGCACCCAAGTGGGCGTCCCAGCGTTCCACTCCACCAGCTGCGACCACGCCCACCAGCAGCCGGAATGGGAAGCCTCCGCCGGATCTTCCCTCATCCCCATCCAGCCCACCAAATCCTTCAGCCGCCTCCCCCACTCCTCCCCCCGGTTCGGCCCGGTTCTCGACCCTCGGACCAAGCGGGTCCAGCTCTGGAACCGGGCCCTCCTGCTGGCCCGTGGGATGGCCCTCGCCGTCGACCCGCTCTACTTCTACGCCCTCTCCATCGGCCGCGGCGGCTCCCCCTGCCTCTACATGGACGGCGCTTTGGCCGCCGCCGTCACCGCTCTCCGCACGTGCCTTGATTTACTGCACCTGTGGCACGTTTGGCTCCAGTTCCGCCTTGCTTACGTGTCCAGGGAGAGTATGGTCATTGGCTGCGGCAAACTCGTGTGGGACGCACGTGCCATCGCCTCCCACTACCTTCGCTCCATCCGAGGCTTCTGGTTCGACGCCTTCGTCATCCTTCCCGTTCCTCAGATTGTTTACTGGTTGGTTTTACCAAAACTGATCAGAGAAGAGAAAATCAAGCTTATAATGACAGTAATCTTAATAATGTTCTTGTTCCAATTCCTCCCTAAAGTTTACCACTCCATAATTTTAATGAGAAGAATGCAAAAGGTCACTGGTTACATATTTGGCACCATTTGGTGGGGTTTTGGCCTTAATCTCATTGCATATTTCATTGCCTCTCATGTTGCTGGGGGTTGTTGGTATGTTCTTGCCATACAGCGAGTCGCTTCGTGTATTCAGCAACATTGTGAGAGGAACAAGTGCAACCTATCGCTGTCTTGCTCTGAGGAGGTCTGTTATCAGTTCCTCTCGTCAAATACAATGATCGGAAACTCGTGTGGTCGTAATTCAACTGCGGCGTTTAGGCAACCTCTTTGCTTGGATGTCAAGGGTCCATTTGCCTATGGCATCTACAAGTGGGCTCTTCCAGTCATTTCTAGCAATTCCATTTCAGTCAAAATCCTTTATCCCATCTTTTGGGGCTTAATGACTCTCAGTACATTTGGAAATGATCTCGAGCCGACGAGTAATTGGCTGGAAGTATGCTTCAGTATTTGCACAGTGCTCAGTGGACTGCTGCTTTTCACTCTCTTGATTGGTAATATCCAGGTTCTTTTGCACGCCGTCATGGCAAGGAGGCGAAAAATGCAGCTGAGATGTCGAGATTTAGAGTGGTGGATGAGGAGACGACAATTGCCGTCTCGTTTGAGGCAACGAGTTCGACACTACGAACACCAAAGGTGGGCAGCCATGGGTGGAGAAGATGAGATGGAACTAATCAATGATTTGCCTGAAGGTCTTAGAAGAGACATTAAGGGCCATCTTTGTGTTGATCTTATCAAAAAGGTGCCTCTATTCCAAAACTTAGAAAAGCTGATTCTCGACAACATATGTGATCGAGTCAAGCCACTTGTATTCTCCAAAGACGAAAAGATTATCAGAGAAGGAGATCCCGTTCCAAGGATGTTGTTCATAGTTTGTGGACGTGTAGAACGTAGCCAAAGCCTGAGCAAGGGAATGACAGCAACAAGTTTGATCGAACCAGGAGGATTTCTCGGCGACGAGCTGCTATCATGGTGTCTTCGGCGCCCATTTCTCGAGAGGCTTCCAGCTTCATCAGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGGTACAAATTTGCAAACGAGCGACTGAAAAGAACCGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCAGTGAACATACAATTTGCTTGGCGTCGGTACCGAAAGAGGATGCGACGCCCGGTGATAGTTGTGGAAGAAAATGGAAGTAATGAACGCCGGCTTCTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2058 50.87 MWTEPIRPTTPPPPDSEDTTSSAGAVECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLIPIQPTKSFSRLPHSSPRFGPVLDPRTKRVQLWNRALLLARGMALAVDPLYFYALSIGRGGSPCLYMDGALAAAVTALRTCLDLLHLWHVWLQFRLAYVSRESMVIGCGKLVWDARAIASHYLRSIRGFWFDAFVILPVPQIVYWLVLPKLIREEKIKLIMTVILIMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFLSSNTMIGNSCGRNSTAAFRQPLCLDVKGPFAYGIYKWALPVISSNSISVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRQRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKGHLCVDLIKKVPLFQNLEKLILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVERSQSLSKGMTATSLIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIVVEENGSNERRLLQYAAMFMSFRPHDHLE 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34389559 34395027 - Sed0016242.1 Sed11g2035 730681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2035 685 Gene3D - 132 422 - -
Sed11g2035 685 MobiDBLite consensus disorder prediction 1 21 - -
Sed11g2035 685 Pfam Cyclic nucleotide-binding domain 518 607 IPR000595 -
Sed11g2035 685 SUPERFAMILY Voltage-gated potassium channels 86 419 - -
Sed11g2035 685 ProSiteProfiles cAMP/cGMP binding motif profile. 498 577 IPR000595 -
Sed11g2035 685 MobiDBLite consensus disorder prediction 1 15 - -
Sed11g2035 685 SUPERFAMILY cAMP-binding domain-like 425 612 IPR018490 -
Sed11g2035 685 Gene3D Helix hairpin bin 424 489 - -
Sed11g2035 685 CDD CAP_ED 498 605 IPR000595 -
Sed11g2035 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 652 - -
Sed11g2035 685 SMART cnmp_10 498 623 IPR000595 -
Sed11g2035 685 Gene3D Jelly Rolls 496 614 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1885 Sed-Chr7:30608270 Sed11g2035 Sed-Chr11:34389559 1.00E-185 dispersed
Sed11g2035 Sed-Chr11:34389559 Sed13g0274 Sed-Chr13:1906762 6.50E-212 dispersed
Sed11g2035 Sed-Chr11:34389559 Sed12g2238 Sed-Chr12:32810980 1.50E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2035 K05391 - csv:101203560 1248.42