Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2055 ATGGATGCCGATTCTTCTCGATTTCAGTCCTTTGGTCAAACCGAGATTAATTGGGACAAGCTTGATAAAACAAAATTTTATGGCGTAGGAGCTGGCCTCTTTACTGGGATTACAGTGGCACTGTACCCTGTTTCCGTCATAAAAACGAGGATGCAAGTTGCTGTAAAGGATTCTGCCGAGAAAAATGCATTGTCCGTTATTAAAGGCTTACTGAAAACTGATGGGGTTCCTGGTCTTTACAGAGGGTTTGGCACAGTTATCACGGGTGCCATTCCTGCAAGGATTATTTTCCTTACTGCTTTGGAGACGACCAAAGTGGCAACCTTTAAATTGGTCGAGCCATTGAAATTTTCTGAACCTACACAGGCGGCGATAGCAAATGGGTTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTTGTTCCAATTGATGTGATTAGTCAAAAGCTCATGGTTCAAGGATACTCGGGCAATACAAGCTATAATGGGGGCTTCGATGTTGCTAGTAAACTGATAAAGGCTAACGGGATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCATCATCTGGAGGTTCTTAGGCCAAAACTCTACATCTGAAAAAATTGCTCCAAGCCAAGCCCAACTTATTTCAGTTCAAGCCGCTGGTGGAATAATCGCGGGTGCAACAGCTTCCTGCATTACAACGCCATTGGACACTATAAAGACTCGCTTACAGGTGATGGGTGATAAGGGGAAGACAGCAAGAAAAATTGTGGAAAGCTTAATCGCTGAGGATGGATGGAAAGGTTTCTATAGGGGGCTCGGTCCTCGGTTTTTCAGTATGTCAGCCTGGGGAACCTCCATGATATTGGCTTATGAGTACCTCAAGCGGGTGTGTGCAAAAGATGAACAAACTTGA 966 44.41 MDADSSRFQSFGQTEINWDKLDKTKFYGVGAGLFTGITVALYPVSVIKTRMQVAVKDSAEKNALSVIKGLLKTDGVPGLYRGFGTVITGAIPARIIFLTALETTKVATFKLVEPLKFSEPTQAAIANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTSYNGGFDVASKLIKANGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRIIWRFLGQNSTSEKIAPSQAQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARKIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKRVCAKDEQT 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34532966 34537319 - Sed0005943.1 Sed11g2055 730701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2055 321 Gene3D Mitochondrial carrier domain 26 321 IPR023395 -
Sed11g2055 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 11 320 - -
Sed11g2055 321 FunFam Mitochondrial substrate carrier family protein 27 318 - -
Sed11g2055 321 SUPERFAMILY Mitochondrial carrier 19 311 IPR023395 -
Sed11g2055 321 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085(InterPro)
Sed11g2055 321 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085(InterPro)
Sed11g2055 321 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085(InterPro)
Sed11g2055 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 314 IPR018108 -
Sed11g2055 321 Pfam Mitochondrial carrier protein 30 106 IPR018108 -
Sed11g2055 321 Pfam Mitochondrial carrier protein 235 317 IPR018108 -
Sed11g2055 321 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Sed11g2055 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
Sed11g2055 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1667 Sed-Chr9:40089232 Sed11g2055 Sed-Chr11:34532966 6.60E-67 dispersed
Sed11g2055 Sed-Chr11:34532966 Sed12g0750 Sed-Chr12:4440256 1.40E-84 dispersed
Sed11g2055 Sed-Chr11:34532966 Sed13g1891 Sed-Chr13:23895993 1.20E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2055 K15121 - csv:101206140 584.719