Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed11g2057 | ATGGCCTTAGCCATGGCGGTTCTTGCTCTGTTCTTGCTCCTCTGTTTTTGCTCTGCTTTGCTTAAATGGAATGAAGTTCGATATAGGAAAAAAGGGTTGCCTCCAGGTACCATGGGCTGGCCTGTTTTTGGTGAAACCACTGAGTTTTTAAAGCAAGGCCCTAATTTTATGAAATCCCAAAGAGCAAGGTATGGAAGCATTTTCAAATCCCATATCTTGGGGTGTCCTACGATTGTTTCAATGGATCCTGAGGTTAATCGATATGTTTTGATGAATGAATCTAAAGGGCTTGTCCCTGGTTACCCTCAATCCATGCTTGACATTCTTGGAAAATGTAATATCGCCGCCGTCCACGGCGGCGCTCACAAGCTTATGAGAGGTGCTCTCCTCGCCGTCGTCAGTCCCGCCATGATTCGAGATCGGCTTCTACCAAAAGTTGATGACTTTGTGAGATCCCATTTGAGGAATTGGGATAAAAAAATCATTGATATTCAAGATAAAACTAAAGAGATGGCTCTCCGGTCATCCTTGAAGCAGATCGCCGACATCGAATCCGGTCCGTTATCGGAATCTTTCATCCCGGAGTTCTTCAAGCTTGTTCTCGGTACCATCTCTCTCCCGATCGACCTCCCCGGCACTAACTACCGTCGAGGAATTCAGGCAAGAAAGAACATAGTGAAGATGTTGCAGCAACTGATCAATGAAAGAAGAGCTTTAGAGACACAAAAAGATGACATGCTTGGATTTTTAATGAGTGAAGAGAACAAATATAAGCTGAACGATGAAGAAATGATTGATCAGATCATCACTGTTTTGTACTCTGGATATGAAACAGTTTCGACAACCTCTATGATGGCTGTCAAGTTTCTCCATGATCATCCCAAAGTTCTTCAGCAGCTTAGAGAAGAGCATTTGGCAATAAGAGAAAAGAAAAATCATGAGGACCCCATTGATTGGGATGATCTTAAAGCTATGAAGTTCACACGTGCGGTGATATTTGAAACATCAAGAATGGCCACAATTGTTAATGGGGTTTTGAGGAAAACTACAAAGGACATGGAAGTAAATGGCTTTCTCATTCCAAAAGGATGGAGGATTTATGTCTATACCAGAGAGATAAACTATGACCCTTTTCTCTATTCTGAACCATTCACCTTCAACCCATGGAGATGGCTGGACAAAAACTTGGAGTCCCATAATAACTTCTTCATCTTTGGAGGTGGAACCAGACATTGTCCTGGCAAAGAATTGGGAATTGCAGAGATTTCTACTTTTTTACATTACTTTGTTACTAAATACAGGTAA | 1305 | 41.92 | MALAMAVLALFLLLCFCSALLKWNEVRYRKKGLPPGTMGWPVFGETTEFLKQGPNFMKSQRARYGSIFKSHILGCPTIVSMDPEVNRYVLMNESKGLVPGYPQSMLDILGKCNIAAVHGGAHKLMRGALLAVVSPAMIRDRLLPKVDDFVRSHLRNWDKKIIDIQDKTKEMALRSSLKQIADIESGPLSESFIPEFFKLVLGTISLPIDLPGTNYRRGIQARKNIVKMLQQLINERRALETQKDDMLGFLMSEENKYKLNDEEMIDQIITVLYSGYETVSTTSMMAVKFLHDHPKVLQQLREEHLAIREKKNHEDPIDWDDLKAMKFTRAVIFETSRMATIVNGVLRKTTKDMEVNGFLIPKGWRIYVYTREINYDPFLYSEPFTFNPWRWLDKNLESHNNFFIFGGGTRHCPGKELGIAEISTFLHYFVTKYR | 434 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 34570422 | 34573454 | + | Sed0019021.2 | Sed11g2057 | 730703 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed11g2057 | 434 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 405 | 414 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed11g2057 | 434 | Coils | Coil | 222 | 242 | - | - | |
| Sed11g2057 | 434 | PRINTS | P450 superfamily signature | 274 | 291 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PRINTS | P450 superfamily signature | 330 | 341 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PRINTS | P450 superfamily signature | 403 | 412 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PRINTS | P450 superfamily signature | 412 | 423 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | Gene3D | Cytochrome P450 | 24 | 434 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | CDD | CYP90-like | 60 | 434 | - | - | |
| Sed11g2057 | 434 | FunFam | Cytochrome P450 85A1 | 24 | 434 | - | - | |
| Sed11g2057 | 434 | SUPERFAMILY | Cytochrome P450 | 27 | 434 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | Pfam | Cytochrome P450 | 34 | 433 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PANTHER | CYTOCHROME P450 26 | 33 | 433 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Sed11g2057 | 434 | PRINTS | E-class P450 group I signature | 402 | 412 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PRINTS | E-class P450 group I signature | 329 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PRINTS | E-class P450 group I signature | 369 | 393 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed11g2057 | 434 | PRINTS | E-class P450 group I signature | 412 | 434 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed11g2057 | Sed-Chr11:34570422 | Sed14g1163 | Sed-Chr14:20979121 | 4.40E-73 | dispersed | |
| Sed11g2056 | Sed-Chr11:34570422 | Sed11g2057 | Sed-Chr11:34570422 | 6.40E-256 | tandem | |
| Sed11g2057 | Sed-Chr11:34570422 | Sed11g2058 | Sed-Chr11:34570422 | 3.20E-204 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed11g2057 | K09590 | - | csv:101206858 | 776.548 |