Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2063 ATGGGTGCTGTCTGCTGCTGTTTGAGTGTGGAGGATTTTGAAGACTATGTCAATCATAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAATGCATACACGTTGATTTTTCGAAGAGGAGAAATGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCTGCTGCATCAATAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCGTTGCCGTATGATGCTGACCCCAGATACGTCCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACACGAGGAGTCAGAACCTTTAAGGGGTGAAGTAGATACAGATTCAGATTCTTTGGGCAGGGCGGGCAAATGGAATGGATCTGCTTGTCTTGAGGGATCTAAAGAAAATATTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCATTGGAGTTGGGTACGCGCATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGCCTTGAAGAGTATACTTCAGAGAATCCCAAGATAGTGACCAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTTGTTACGTAAGAAACCGAGGGTTAATAGTGCAGTTAGCATACTGAAGAGAAAACGCTCCCACCACTCCAACATGTACAACCCAAAAGGGCAAGAAATGGACATTAACGATGTATTTGGGATGACCCAGAATGTAAGCTTGCCAAGAAAGAGTGCAATTTATGTTTGGGGCTATAATCAATCGGGTCAGACCGGTCGAAAGGGGAAGGATCATCAATTGAGGGTTCCCAGGAAGCTCCATCCTGATCTTTTTGGATGTCCTGTTGGAACTAATTGTCGATGGCTCGATATCGATTGCGGTCGTGAACATACCGCTGCTGTCGCTTCTGATGGCTCACTTTTTACCTGGGGTGCAAATGATTTTGGTCAACTGGGGGATGGAACTGAGGACAAGAGCAAAGAGCCAAAGAAAGTGGAGCAATTGCAGGCCGAGTTTGTGAAGTCGGTTTCATGTGGAGCACATTGTACTGCTGCGATTGCAGAACCTCATGAGAATGATGGCACCATTTCAACTAGTAGACTCTGGATTTGGGGGCAAAATCAGGGATCCAATTTGCCACGCTTATTTTGGGGAGCCTTCAAACCAGAAACAATTATTCGTCAAGTGTCGTGTGGGGCAGTTCATGTAGTGGCATTGTCAGATGATGGGAAAATGCAATCTTGGGGCTACAATGAGTATGGTCAGCTAGGCAGGGGTGTTACTTCTGAAGGTTTACAAGGAGCTCGAATTATAAGTGCTTACGCAAAGTTCCTTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCACTCTGCAGCTATATCTGAAAACGGCGAGGTCTATACATGGGGACTAGGAAGTATGGGTCAACTTGGTCATTGTTCCCTTCAGTCTGTGGACAAAGAGTTGATACCTCGGCGAGTTGTTGCTCTTGATGGAATATGGATAAAAGATATCGCATGTGGTGGAGTTCACACATGTGCCATTACTCAAAAAAGCTCTTTGTATGCATGGGGTGGCGGCCAAGTCGGACAATTAGGCCTCGGTCCCCAGACTGGGTTTTTTTCATGTGCTGTGGGTGACTCCGAGACGTTTCTTCGAAATTTGCCTATATTGGTTGTCCCAAATGGCGTACTACATGTTGCTTGTGGACATTCGCATACTCTAGTTTCAATGAGGGATGGTAGAATCCGTGGATGGGGTTACAATAGCTATGGTCAGGCAGCTAATGAGAAATCTACCTATGCTTGGTATCCATCCCCTGTTGATTGGTGTGTAGGTGAAGTGCGAAAACTAGCTGCCGGTGGTGGACATTCAGCTGTCTTAACAGATGCTTGTTCCTTGAAGGAGCTATGTGAGTTTAGACTTGCTGATACGGTTAACTTGCAGAATGCTTCTGAAATCGAAGATGTTGCGTCCATGACTGGATCAGATGCTTTAGCACGCCTTTGTGGACGGCTTAGGTATCAAGCTTTCATGCATAATCTAATTTATTACTGCACTAAGCACAAATCTCTGATACCTCACCTTAAATGGATTCAGATTTCAGATGGTAATTGTGATTTTGTCCATTACTTTGATCAATTTTGA 2235 44.56 MGAVCCCLSVEDFEDYVNHNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEMHSVSSSIQGATSMNSAASIDNSLSEMYRSPPRPLPYDADPRYVRLQRDGLISRREKGSSHLHEESEPLRGEVDTDSDSLGRAGKWNGSACLEGSKENIGKSSLKFPSTKSTIGVGYAHTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVLLRKKPRVNSAVSILKRKRSHHSNMYNPKGQEMDINDVFGMTQNVSLPRKSAIYVWGYNQSGQTGRKGKDHQLRVPRKLHPDLFGCPVGTNCRWLDIDCGREHTAAVASDGSLFTWGANDFGQLGDGTEDKSKEPKKVEQLQAEFVKSVSCGAHCTAAIAEPHENDGTISTSRLWIWGQNQGSNLPRLFWGAFKPETIIRQVSCGAVHVVALSDDGKMQSWGYNEYGQLGRGVTSEGLQGARIISAYAKFLDEAPELVKITKVSCGEYHSAAISENGEVYTWGLGSMGQLGHCSLQSVDKELIPRRVVALDGIWIKDIACGGVHTCAITQKSSLYAWGGGQVGQLGLGPQTGFFSCAVGDSETFLRNLPILVVPNGVLHVACGHSHTLVSMRDGRIRGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLADTVNLQNASEIEDVASMTGSDALARLCGRLRYQAFMHNLIYYCTKHKSLIPHLKWIQISDGNCDFVHYFDQF 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34613965 34626263 + Sed0014999.1 Sed11g2063 730709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2063 744 ProSiteProfiles Zinc finger RING-type profile. 177 216 IPR001841 -
Sed11g2063 744 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 378 IPR000408 -
Sed11g2063 744 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 326 IPR000408 -
Sed11g2063 744 Pfam Regulator of chromosome condensation (RCC1) repeat 326 375 IPR000408 -
Sed11g2063 744 Pfam Regulator of chromosome condensation (RCC1) repeat 492 544 IPR000408 -
Sed11g2063 744 Pfam Regulator of chromosome condensation (RCC1) repeat 269 323 IPR000408 -
Sed11g2063 744 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 479 489 IPR000408 -
Sed11g2063 744 PRINTS Chromosome condensation regulator RCC1 signature 310 323 IPR000408 -
Sed11g2063 744 PRINTS Chromosome condensation regulator RCC1 signature 418 434 IPR000408 -
Sed11g2063 744 PRINTS Chromosome condensation regulator RCC1 signature 434 448 IPR000408 -
Sed11g2063 744 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Sed11g2063 744 PRINTS Chromosome condensation regulator RCC1 signature 537 555 IPR000408 -
Sed11g2063 744 PRINTS Chromosome condensation regulator RCC1 signature 605 626 IPR000408 -
Sed11g2063 744 CDD RING-H2_AIRP1-like 173 216 - -
Sed11g2063 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 225 IPR013083 -
Sed11g2063 744 MobiDBLite consensus disorder prediction 103 128 - -
Sed11g2063 744 SUPERFAMILY RING/U-box 169 216 - -
Sed11g2063 744 SUPERFAMILY RCC1/BLIP-II 259 449 IPR009091 -
Sed11g2063 744 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 610 660 IPR000408 -
Sed11g2063 744 SUPERFAMILY RCC1/BLIP-II 387 660 IPR009091 -
Sed11g2063 744 SMART ring_2 177 217 IPR001841 -
Sed11g2063 744 Pfam Ring finger domain 176 216 IPR001841 -
Sed11g2063 744 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 412 660 IPR051210 -
Sed11g2063 744 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 492 IPR000408 -
Sed11g2063 744 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 547 IPR000408 -
Sed11g2063 744 Pfam Regulator of chromosome condensation (RCC1) repeat 415 444 - -
Sed11g2063 744 Pfam Regulator of chromosome condensation (RCC1) repeat 594 622 - -
Sed11g2063 744 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 548 609 IPR000408 -
Sed11g2063 744 Gene3D - 463 667 IPR009091 -
Sed11g2063 744 Gene3D - 226 462 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0277 Sed-Chr3:1669336 Sed11g2063 Sed-Chr11:34613965 1.50E-72 dispersed
Sed11g1335 Sed-Chr11:29111114 Sed11g2063 Sed-Chr11:34613965 9.20E-30 dispersed
Sed11g2063 Sed-Chr11:34613965 Sed11g2075 Sed-Chr11:34714358 1.40E-29 dispersed
Sed11g2060 Sed-Chr11:34593385 Sed11g2063 Sed-Chr11:34613965 2.40E-141 proximal
Sed11g2063 Sed-Chr11:34613965 Sed03g0276 Sed-Chr3:1669336 2.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2063 - - - 0.0