Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2070 ATGGGAATGATGAGAACTGAGGCTTCTGCTTCTTGTCTTGTGGCTTCTTTATTGTTTTGGGCATCTGCAATTAATGGCTTGCTTTCTCCCAAAGGTGTAAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCACATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACCATGGTTACTTGCTCCCCTGAGAGCCTTGTCATTGGCCTAGGGACTCCAAGCCAGAACCTGTCTGGGACACTTTCTTCAAGCATTGGGAATTTGTCAAACCTCCAAATTGTGCTGTTACAGAACAACAATATTACAGGTCCAATTCCCCCAGAGCTTGGGAGGCTTTCAAAGCTTCAAACACTTGATCTATCAAACAACTTCTTCACTGGGGGAGTTCCTTCTTCTTTAGGCCATTTGAAAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGAGCAATTCCAATGTCTTTAGCCAACATGACCCAGCTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCAAGATTTCCCAGCAGAACATTCAACATTGTTGGGAATCCTCTGATCTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGGACGACTCTAATGCCAATGTCCATGAATTTGAACACCACTCAAACTGGTTTACCTCCTGTGAGATTGAAGAGTCACAAAATGGCCCTTACATTTGGCTTGAGCCTTGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTTATATGGTGGAGAAGACGAATCAATCGACTCACATTCTTCGATGTAAAAGACCGACAACATGAGGAGATTTCGCTTGGAAATCTGAGAAGGTTCCAGTTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGTACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCGGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGTAGAGGTGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTACACCGCCATCTCCTAAGACTATACGGCTTTTGCAACACACCTACCGAAAGGCTTCTTGTTTACCCGTATATGTCTAATGGCAGCGTCGCCTCACGTCTCAAAGGAAAACCAGTACTAGACTGGGGAACAAGGAAGAGAATAGCTATAGGAGCTGCAAGGGGATTGCTATACCTCCATGAACAGTGCGACCCCAAGATAATACATAGAGATGTTAAGGCAGCTAACATATTGCTCGACGACTGCTGCGAGGCTGTCGTTGGAGATTTCGGGTTGGCAAAGCTTCTGGACCATCAAGATTCACATGTCACAACTGCGGTGAGAGGCACCGTGGGACATATAGCTCCCGAGTATCTTTCCACTGGACAGTCATCCGAGAAAACAGACGTTTTTGGATTCGGAATCCTCCTCCTTGAACTGATCACAGGACAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGATTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTAGAAGTGCTAGTGGACAAGGATCTGAAAGCAAACTATGAGAGAGTTGAACTGGAAGAGATGGTTCAAGTGGCTCTATTATGCACACAATATCTACCAGGATATAGACCAAAGATGTCAGAGGTTGTCAGAATGCTTGAAGGAGAAGGGCTGGCAGTGAGATGGGAAGCTTCTCAGAGAGTTGATTCATCAAAGTGCAGACCTCATGATTTTTCCTCATCAGACAGATACTCTGATCTCACTGATGATTCATCTTTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1881 44.87 MGMMRTEASASCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSIGNLSNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGGVPSSLGHLKSLQYLRLNNNSLSGAIPMSLANMTQLAFLDVSYNNISGPLPRFPSRTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNTTQTGLPPVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRINRLTFFDVKDRQHEEISLGNLRRFQFRELQIATNNFSSKYILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDCCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKANYERVELEEMVQVALLCTQYLPGYRPKMSEVVRMLEGEGLAVRWEASQRVDSSKCRPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34677154 34682169 - Sed0004239.1 Sed11g2070 730716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2070 626 SUPERFAMILY L domain-like 35 307 - -
Sed11g2070 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Sed11g2070 626 Pfam Protein kinase domain 309 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2070 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Sed11g2070 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Sed11g2070 626 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Sed11g2070 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Sed11g2070 626 SMART serkin_6 306 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2070 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2070 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Sed11g2070 626 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Sed11g2070 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Sed11g2070 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Sed11g2070 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2070 626 SUPERFAMILY Protein kinase-like (PK-like) 283 576 IPR011009 -
Sed11g2070 626 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515(InterPro)
Sed11g2070 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1834 Sed-Chr6:42769520 Sed11g2070 Sed-Chr11:34677154 2.50E-199 dispersed
Sed07g2002 Sed-Chr7:34982001 Sed11g2070 Sed-Chr11:34677154 2.00E-220 dispersed
Sed09g1718 Sed-Chr9:40428308 Sed11g2070 Sed-Chr11:34677154 5.70E-183 dispersed
Sed09g1719 Sed-Chr9:40428308 Sed11g2070 Sed-Chr11:34677154 3.20E-181 dispersed
Sed11g1536 Sed-Chr11:30973259 Sed11g2070 Sed-Chr11:34677154 1.60E-201 dispersed
Sed11g1537 Sed-Chr11:30974128 Sed11g2070 Sed-Chr11:34677154 6.70E-164 dispersed
Sed11g2070 Sed-Chr11:34677154 Sed12g2259 Sed-Chr12:32916373 5.40E-181 dispersed
Sed11g2070 Sed-Chr11:34677154 Sed11g2071 Sed-Chr11:34677154 1.20E-289 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79933 PF00069 Pkinase 2.90E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2070 - - - 0.0