Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2071 ATGAATTGTTTCACTTGTTTCATTTCAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCACATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACCATGGTTACTTGCTCCCCTGAGAGCCTTGTCATTGGCCTAGGGACTCCAAGCCAGAACCTGTCTGGGACACTTTCTTCAAGCATTGGGAATTTGTCAAACCTCCAAATTGTGCTGTTACAGAACAACAATATTACAGGTCCAATTCCCCCAGAGCTTGGGAGGCTTTCAAAGCTTCAAACACTTGATCTATCAAACAACTTCTTCACTGGGGGAGTTCCTTCTTCTTTAGGCCATTTGAAAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGAGCAATTCCAATGTCTTTAGCCAACATGACCCAGCTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCAAGATTTCCCAGCAGAACATTCAACATTGTTGGGAATCCTCTGATCTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGGACGACTCTAATGCCAATGTCCATGAATTTGAACACCACTCAAACTGGTTTACCTCCTGTGAGATTGAAGAGTCACAAAATGGCCCTTACATTTGGCTTGAGCCTTGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTTATATGGTGGAGAAGACGAATCAATCGACTCACATTCTTCGATGTAAAAGACCGACAACATGAGGAGATTTCGCTTGGAAATCTGAGAAGGTTCCAGTTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGTACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCGGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGTAGAGGTGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTACACCGCCATCTCCTAAGACTATACGGCTTTTGCAACACACCTACCGAAAGGCTTCTTGTTTACCCGTATATGTCTAATGGCAGCGTCGCCTCACGTCTCAAAGGAAAACCAGTACTAGACTGGGGAACAAGGAAGAGAATAGCTATAGGAGCTGCAAGGGGATTGCTATACCTCCATGAACAGTGCGACCCCAAGATAATACATAGAGATGTTAAGGCAGCTAACATATTGCTCGACGACTGCTGCGAGGCTGTCGTTGGAGATTTCGGGTTGGCAAAGCTTCTGGACCATCAAGATTCACATGTCACAACTGCGGTGAGAGGCACCGTGGGACATATAGCTCCCGAGTATCTTTCCACTGGACAGTCATCCGAGAAAACAGACGTTTTTGGATTCGGAATCCTCCTCCTTGAACTGATCACAGGACAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGATTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTAGAAGTGCTAGTGGACAAGGATCTGAAAGCAAACTATGAGAGAGTTGAACTGGAAGAGATGGTTCAAGTGGCTCTATTATGCACACAATATCTACCAGGATATAGACCAAAGATGTCAGAGGTTGTCAGAATGCTTGAAGGAGAAGGGCTGGCAGTGAGATGGGAAGCTTCTCAGAGAGTTGATTCATCAAAGTGCAGACCTCATGATTTTTCCTCATCAGACAGATACTCTGATCTCACTGATGATTCATCTTTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1800 44.83 MNCFTCFISVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSIGNLSNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGGVPSSLGHLKSLQYLRLNNNSLSGAIPMSLANMTQLAFLDVSYNNISGPLPRFPSRTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNTTQTGLPPVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRINRLTFFDVKDRQHEEISLGNLRRFQFRELQIATNNFSSKYILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDCCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKANYERVELEEMVQVALLCTQYLPGYRPKMSEVVRMLEGEGLAVRWEASQRVDSSKCRPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34677154 34682169 - Sed0004239.2 Sed11g2071 730717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2071 599 SMART serkin_6 279 548 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2071 599 FunFam Somatic embryogenesis receptor kinase 1 248 355 - -
Sed11g2071 599 Gene3D Phosphorylase Kinase; domain 1 248 355 - -
Sed11g2071 599 ProSiteProfiles Protein kinase domain profile. 279 534 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2071 599 FunFam Putative LRR receptor-like serine/threonine-protein kinase 7 188 - -
Sed11g2071 599 Pfam Leucine rich repeat N-terminal domain 10 46 IPR013210 -
Sed11g2071 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2071 599 SUPERFAMILY Protein kinase-like (PK-like) 256 549 IPR011009 -
Sed11g2071 599 Gene3D Ribonuclease Inhibitor 9 188 IPR032675 -
Sed11g2071 599 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Sed11g2071 599 Pfam Protein kinase domain 282 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2071 599 FunFam Somatic embryogenesis receptor-like kinase 1 356 568 - -
Sed11g2071 599 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 599 - -
Sed11g2071 599 SUPERFAMILY L domain-like 8 280 - -
Sed11g2071 599 Pfam Leucine Rich Repeat 74 96 IPR001611 GO:0005515(InterPro)
Sed11g2071 599 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524(InterPro)
Sed11g2071 599 Gene3D Transferase(Phosphotransferase) domain 1 356 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2071 Sed-Chr11:34677154 Sed12g2259 Sed-Chr12:32916373 1.50E-180 dispersed
Sed11g2070 Sed-Chr11:34677154 Sed11g2071 Sed-Chr11:34677154 1.20E-289 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79934 PF00069 Pkinase 2.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2071 - - - 0.0