Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2083 ATGGCTTCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGTTTTTTCACCTCCTTCCCCTTCTCCTCCTTTGGATTCTGCAATATCTCCCTCATCTCCTACATCTTCTGTGCCTAATCAGACTGGTGAACCTCCTTCTTCACCTTCTACTCCTTCAGCTCCACCTCCTCAATCACCACTAGCTGATGTTCCTCCTCCACCATTGACAGCATTACCACCTGTAACACCAGCTCTTCCCCTGCCTTTGCCACCGCTATCTCCGCCGTCTCCGCCACCACCTTCAATGTCAACCTCTCCCCCACCACCTTTAACATCAACCTCTTCCCCACCACCACCTTTAACATCTACCTCCCCACCACCACCTTCAACAACATCCCCACCGCCTTCCTCTCCGTCACCGCCTCCTCCGGATCGATCCGTTGCCTCTCCTCCTCCTCCTCCCGAAGCTTCACCTTCCCCTCCAGATGTATTGCCACCTCCTCCGCCACCAGCATCACGCGATTCTCCACCTCCTCCATCCAATCCTAGACCTCCCTCTCCCCCTCCCCCTGAAACAATTCCACCTTCTCCACCTCCACCAGCTAAGGTTCCAACGCCACCTTCACCAACAGGAGAGTCACCTACAGAATCTCCCCCATCCCCCAAGGTTTCTCCTCCTCCTTTTGATTCTCAATCTCCACCATCATCAGTTGAGGCCCCTCCACCGAGATCCGCTGTACCATCACCTCCTCCTTCAGTCCCTTCATCATCTGCTCCTCCTCCAGTTATTGTTCCTGGTTCTCCTTCTAATTCATCTGGTAGTACAAGTCCTAGTACTCCTCCAACTTCTGTTGTACCAGAACTTCCAATTCCAACAATGAATGGCACTCGTGTCACTACAAATAAAGGGGGTCTCGGCACGGGAACAACTGTCGCAGTTGGTAGCGTGGTGGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTATGTGGTTTGTTCAGAAACGGAAGAGAAAAACAAAGAATATCCCTTACACCATGCCTTCTCCTTTTTCCTCACAAAATTCAGACTCACTTTTCATAAGGCCTAATTCTTCGATTCCCAGGGCGGGAAGTCGTACTGATAGTGAATTCAAATATGCTTCATCAGAGGGAGGTGGGGTAGGTAATTCAAGATCATTTCTTTATGAAGAGCTACACCAGGCAACAGGAGGGTTTTCATCTAATAACGTTTTGGGGGAGGGTGGATTTGGCTGTGTGTACAAAGGCACCCTTGCCGATGCAAGAGACGTAGCTGTTAAACAACTTAAAATGGGAGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACACTTGGTTTCCCTGGTCGGTTACTGTATCTCGGATCATCAAAGGTTGCTTGTCTATGATTATGTTCCAAACGACACCCTTCATTACCATCTGCATGGTGCAAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCCGGTGCAGCCCGTGGAATTGCTTACCTACATGAAGATTGCCATCCACGAATTATTCATAGGGACATTAAATCGTCTAACATTCTGCTCGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCATTGGATACACATACACATGTAACAACTCGTGTAATGGGAACCTTTGGATACATGGCTCCAGAATACGCAACAAGTGGAAAATTGACAGATAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGTCTGTTGATTCTTCTCAGCCTTTAGGGGACGAGAGCTTAGTTGAATGGGTAAACCTTCTCTATCTTAACCTCTTTCTTGCTATATAA 1884 48.09 MASSPSPSISPPENPSVFSPPSPSPPLDSAISPSSPTSSVPNQTGEPPSSPSTPSAPPPQSPLADVPPPPLTALPPVTPALPLPLPPLSPPSPPPPSMSTSPPPPLTSTSSPPPPLTSTSPPPPSTTSPPPSSPSPPPPDRSVASPPPPPEASPSPPDVLPPPPPPASRDSPPPPSNPRPPSPPPPETIPPSPPPPAKVPTPPSPTGESPTESPPSPKVSPPPFDSQSPPSSVEAPPPRSAVPSPPPSVPSSSAPPPVIVPGSPSNSSGSTSPSTPPTSVVPELPIPTMNGTRVTTNKGGLGTGTTVAVGSVVGVLVLSLVIMAMWFVQKRKRKTKNIPYTMPSPFSSQNSDSLFIRPNSSIPRAGSRTDSEFKYASSEGGGVGNSRSFLYEELHQATGGFSSNNVLGEGGFGCVYKGTLADARDVAVKQLKMGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDHQRLLVYDYVPNDTLHYHLHGANRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDTHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKSVDSSQPLGDESLVEWVNLLYLNLFLAI 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34752321 34758143 + Sed0022388.3 Sed11g2083 730729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2083 627 ProSiteProfiles Protein kinase domain profile. 401 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2083 627 Gene3D Phosphorylase Kinase; domain 1 373 476 - -
Sed11g2083 627 MobiDBLite consensus disorder prediction 47 262 - -
Sed11g2083 627 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524(InterPro)
Sed11g2083 627 SMART serkin_6 401 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2083 627 MobiDBLite consensus disorder prediction 263 277 - -
Sed11g2083 627 MobiDBLite consensus disorder prediction 8 30 - -
Sed11g2083 627 MobiDBLite consensus disorder prediction 1 297 - -
Sed11g2083 627 FunFam proline-rich receptor-like protein kinase PERK8 477 624 - -
Sed11g2083 627 Gene3D Transferase(Phosphotransferase) domain 1 477 623 - -
Sed11g2083 627 SUPERFAMILY Protein kinase-like (PK-like) 384 611 IPR011009 -
Sed11g2083 627 Pfam Protein tyrosine and serine/threonine kinase 404 600 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2083 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2083 627 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 276 619 IPR047117 -
Sed11g2083 627 FunFam Proline-rich receptor-like protein kinase PERK8 374 476 - -
Sed11g2083 627 MobiDBLite consensus disorder prediction 31 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2081 Sed-Chr11:34752321 Sed11g2083 Sed-Chr11:34752321 9.70E-222 dispersed
Sed11g2083 Sed-Chr11:34752321 Sed13g0992 Sed-Chr13:7764733 2.30E-94 dispersed
Sed11g2082 Sed-Chr11:34752321 Sed11g2083 Sed-Chr11:34752321 9.70E-222 tandem
Sed11g2083 Sed-Chr11:34752321 Sed11g2084 Sed-Chr11:34752321 1.20E-193 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79937 PF07714 PK_Tyr_Ser-Thr 1.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2083 - - - 0.0