Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2112 ATGGCAGTTTTAGTAATTTCTCCTCTTTCATTCATACTCCTCATCTTCCTTCCTGCAATCTCTGCCGACTACGGCGGAGTACAGTCGGGCCACGCCACGTTCTACGGCGGTGGCGACGCTACCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGTTATGGGACGAACACGGCGGCGCTGAGTACGGCTCTGTTTAACAATGGGCTGAGCTGCGGCTCTTGCTTTGAAATTAGTTGCAACAGCGATCCCAAATGGTGTCTTCCGGGCAAAATCATTGTCACTGCCACCAATTTTTGCCCGCCCAACCCTGCTCTGCCCAACGACAATGGCGGCTGGTGCAACGCTCCTCTCCAGCACTTTGATTTGGCTCAGCCTGCTTTCCTTCAGATCGCTCAGTACCGTGCCGGCATCGTTCCCGTCTCCTTTCGAAGAGTTCCATGCGTGAAGAAAGGAGGAATAAGGTTCACAATTAATGGCCATTCATATTTCAACTTGGTTCTCATCACCAACGTCGCCGGCGCCGGCGACGTCCACGCCGTGTCGATCAAAGGATCCAAAACAGGATGGCAACCGATGTCGAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGCCTCTCTTTCCAAGTCACCACCAGCGACGGCCGCACCGTCACCACTTACGACGCCGCTCCGGCGAGCTGGCAGTTCGGCCAGACCTTCGAAGGCGGCCAGTTTTAA 750 54.27 MAVLVISPLSFILLIFLPAISADYGGVQSGHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEISCNSDPKWCLPGKIIVTATNFCPPNPALPNDNGGWCNAPLQHFDLAQPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSKTGWQPMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTTYDAAPASWQFGQTFEGGQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35050955 35053379 + Sed0015830.1 Sed11g2112 730758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2112 249 SUPERFAMILY Barwin-like endoglucanases 13 175 IPR036908 -
Sed11g2112 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Sed11g2112 249 PANTHER EXPANSIN-A15 10 249 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 CDD DPBB_EXPA_N 28 152 - -
Sed11g2112 249 Gene3D - 18 152 IPR036908 -
Sed11g2112 249 Gene3D - 156 249 IPR036749 -
Sed11g2112 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Sed11g2112 249 Pfam Lytic transglycolase 62 147 IPR009009 -
Sed11g2112 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Sed11g2112 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Sed11g2112 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Sed11g2112 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Sed11g2112 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Sed11g2112 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Sed11g2112 249 SMART dpbb_1 62 147 IPR007112 -
Sed11g2112 249 FunFam Expansin 157 249 - -
Sed11g2112 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Sed11g2112 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Sed11g2112 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Sed11g2112 249 FunFam Expansin 18 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2953 Sed-Chr4:41018361 Sed11g2112 Sed-Chr11:35050955 3.00E-114 dispersed
Sed07g2495 Sed-Chr7:40621356 Sed11g2112 Sed-Chr11:35050955 1.30E-99 dispersed
Sed08g0227 Sed-Chr8:1292903 Sed11g2112 Sed-Chr11:35050955 8.60E-106 dispersed
Sed08g0228 Sed-Chr8:1292903 Sed11g2112 Sed-Chr11:35050955 9.40E-106 dispersed
Sed08g1977 Sed-Chr8:34164854 Sed11g2112 Sed-Chr11:35050955 1.90E-91 dispersed
Sed08g2079 Sed-Chr8:34965760 Sed11g2112 Sed-Chr11:35050955 4.00E-87 dispersed
Sed11g1104 Sed-Chr11:26746562 Sed11g2112 Sed-Chr11:35050955 6.20E-91 dispersed
Sed11g2008 Sed-Chr11:34240098 Sed11g2112 Sed-Chr11:35050955 3.00E-98 dispersed
Sed11g2112 Sed-Chr11:35050955 Sed13g1396 Sed-Chr13:19376925 3.60E-96 dispersed
Sed11g2112 Sed-Chr11:35050955 Sed03g0339 Sed-Chr3:2053217 2.00E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2112 - - - 0.0