Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2121 ATGTCAAGAGATCAAAGGGAATCGGAGATCAAGAGGGAATTAATTGAAGGGTTTTATCCAAATTTTATGGGAAGAAGGCACATTTTGAATCCACCGAGTGGGACATTGAATACAATAACTCCATGTGCAGCTTGTAAGCTTCTAAGAAGAAGGTGTGCTCAAGAATGCCCTTTTTCTCCTTATTTCTCTCCACATGAACCCCACAAATTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAATGTTGCTAAGATGCTCATGGAGGTACCAGAGAGTCAAAGAGCAGATGCAGCAAACAGTTTAGTTTATGAAGCCAATCTGAGGCTGAGAGATCCAGTTTATGGGTGCATGGGCGCCATTTCATCTCTTCAACACCAAGTTCAAACTTTACAAGCTCAGCTCACTACCATTAGAACTGAGATTTTGAAGTACAAATATAGAGAGGCTATAATCCCCTCTCCATCTCCTTCTTCACACATCACTTTGATTTCCGCAACCGGCGGCCTCGTTTCCGCCACCGGAACGCCTCCCGCAGCCCCTCCGACTCCCCCGCATTCTCAACCGCCTCCGCTCTCTCTTCCACCACCTCTTCCTCCGCCGTCGTCCTCCATCTTTTCCCCGACAATAATCAGTAGTAGTTCTACTCCTGAGTTTAACCCTATCTCAACCGAACATATTTCGTATTTCGGTTGA 693 45.89 MSRDQRESEIKRELIEGFYPNFMGRRHILNPPSGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISSLQHQVQTLQAQLTTIRTEILKYKYREAIIPSPSPSSHITLISATGGLVSATGTPPAAPPTPPHSQPPPLSLPPPLPPPSSSIFSPTIISSSSTPEFNPISTEHISYFG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35104592 35107671 - Sed0022673.1 Sed11g2121 730767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2121 230 MobiDBLite consensus disorder prediction 204 219 - -
Sed11g2121 230 ProSiteProfiles LOB domain profile. 40 141 IPR004883 -
Sed11g2121 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 149 - -
Sed11g2121 230 Pfam Lateral organ boundaries (LOB) domain 41 137 IPR004883 -
Sed11g2121 230 MobiDBLite consensus disorder prediction 176 203 - -
Sed11g2121 230 MobiDBLite consensus disorder prediction 171 219 - -
Sed11g2121 230 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3791 Sed-Chr5:45612942 Sed11g2121 Sed-Chr11:35104592 5.60E-34 dispersed
Sed07g2592 Sed-Chr7:41488810 Sed11g2121 Sed-Chr11:35104592 4.10E-35 dispersed
Sed11g2121 Sed-Chr11:35104592 Sed12g2463 Sed-Chr12:34257423 1.40E-33 dispersed
Sed11g2121 Sed-Chr11:35104592 Sed04g2946 Sed-Chr4:40984546 6.00E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40046 PF03195 LOB 1.20E-40 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2121 - - - 0.0