Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g2121 | ATGTCAAGAGATCAAAGGGAATCGGAGATCAAGAGGGAATTAATTGAAGGGTTTTATCCAAATTTTATGGGAAGAAGGCACATTTTGAATCCACCGAGTGGGACATTGAATACAATAACTCCATGTGCAGCTTGTAAGCTTCTAAGAAGAAGGTGTGCTCAAGAATGCCCTTTTTCTCCTTATTTCTCTCCACATGAACCCCACAAATTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAATGTTGCTAAGATGCTCATGGAGGTACCAGAGAGTCAAAGAGCAGATGCAGCAAACAGTTTAGTTTATGAAGCCAATCTGAGGCTGAGAGATCCAGTTTATGGGTGCATGGGCGCCATTTCATCTCTTCAACACCAAGTTCAAACTTTACAAGCTCAGCTCACTACCATTAGAACTGAGATTTTGAAGTACAAATATAGAGAGGCTATAATCCCCTCTCCATCTCCTTCTTCACACATCACTTTGATTTCCGCAACCGGCGGCCTCGTTTCCGCCACCGGAACGCCTCCCGCAGCCCCTCCGACTCCCCCGCATTCTCAACCGCCTCCGCTCTCTCTTCCACCACCTCTTCCTCCGCCGTCGTCCTCCATCTTTTCCCCGACAATAATCAGTAGTAGTTCTACTCCTGAGTTTAACCCTATCTCAACCGAACATATTTCGTATTTCGGTTGA | 693 | 45.89 | MSRDQRESEIKRELIEGFYPNFMGRRHILNPPSGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISSLQHQVQTLQAQLTTIRTEILKYKYREAIIPSPSPSSHITLISATGGLVSATGTPPAAPPTPPHSQPPPLSLPPPLPPPSSSIFSPTIISSSSTPEFNPISTEHISYFG | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 35104592 | 35107671 | - | Sed0022673.1 | Sed11g2121 | 730767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g2121 | 230 | MobiDBLite | consensus disorder prediction | 204 | 219 | - | - | |
Sed11g2121 | 230 | ProSiteProfiles | LOB domain profile. | 40 | 141 | IPR004883 | - | |
Sed11g2121 | 230 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 39 | 149 | - | - | |
Sed11g2121 | 230 | Pfam | Lateral organ boundaries (LOB) domain | 41 | 137 | IPR004883 | - | |
Sed11g2121 | 230 | MobiDBLite | consensus disorder prediction | 176 | 203 | - | - | |
Sed11g2121 | 230 | MobiDBLite | consensus disorder prediction | 171 | 219 | - | - | |
Sed11g2121 | 230 | Coils | Coil | 120 | 140 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3791 | Sed-Chr5:45612942 | Sed11g2121 | Sed-Chr11:35104592 | 5.60E-34 | dispersed | |
Sed07g2592 | Sed-Chr7:41488810 | Sed11g2121 | Sed-Chr11:35104592 | 4.10E-35 | dispersed | |
Sed11g2121 | Sed-Chr11:35104592 | Sed12g2463 | Sed-Chr12:34257423 | 1.40E-33 | dispersed | |
Sed11g2121 | Sed-Chr11:35104592 | Sed04g2946 | Sed-Chr4:40984546 | 6.00E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40046 | PF03195 | LOB | 1.20E-40 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g2121 | - | - | - | 0.0 |