Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2140 ATGAGTCTGGGTGATCAATATTCTGATGAGATTTGTGTACCTACCAATTCAATTAGGAAGAGGAAGTCACGGAGAAGGCGGGATCGATCGTCCGTGGCCGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGTGAATTCTTGTAATGATGGAAGCAAGCCTATTCCTAAAGCTCCGGCGAAAGGGTCGAAGAAGGGATGTATGAAAGGCAAAGGAGGACCTTTGAATTCACGTTGCAATTACAGAGGTGTGAGGCAGAGGACTTGGGGAAAGTGGGTTGCGGAGATTCGTGAACCCAATAGAGGGAGTAGGTTGTGGCTTGGTACCTTCCCGACTGCGATTGAAGCCGCTCTCGCTTATGACAAGGCTGCTCGGATGATGTATGGCCAGAGCGCTCGTTTGAATCTTCCAAACATTACAAACAGTGGACAGCTGAAAGGGTTTCTTTTAGAGGATTATTTGGGGCTGCGTAACGCGGATTCTTCTACGTGTTCTGAATCGACTACTACTGCCTCGAACCAATCCGAGGTGTGTGTGCCTGAGGAGTTAGTGAAGCCGCAACTTTTCCACTCGAACATTAAGATGGAAGATGGAGAAGGTGAATCCAGGATCGGGAATCTGGTCAATCACATTGCGACGCCAATGAGCTTAGGGAAGGAAGCGGAACGCGAGCATAAACATACACATTGTGAGCATAGAAATGATCAAGCTGTTCATTTAGGAGAAACTGTGTTTCCTAGAATGAATCAGTTGCAGAACTTTCAAATGGATGGAATGTTCGAGTCGAGGACGGGGAATCAGGCTGATCACATTGCGACGCCAGTGAGCTTTGAGAAGCTAGCGAAGCATGCTGATATTGATGCTACATATCGTGACCAGAGCAATTATCAAGAAATCTTATTAGGCGCTGAGATTCCTAGTTTGGATGAGCTGCAGAACTCTCAAGCAAATGAAATGTTCGATGTAGAGGAGCTTCTAGGTCTTATAAAAATCGATTCAATGCATGATTCGAGCTTCTTGCTGGGCAATGAGAGTGGTTCTAACAACATGGGGCCTTCCCAAGTTAGCAATCTTGGGTCTGAGAAACCATCAAGCTTATCATATCAGTTCCAAAATCCCGACGCAAAGCTGCTCGGATGCCCCCAACACATGGAGCAAGCTCCAGCCGATGTCGATTATGGACTCGATTTCTTGAAACAAGGGAGGGAGGAAGATCTGAATGCCGCAGCAGATGATTGTGTAGGATACTTGAATTACGTGGGTGATTTGGGGTTTTGA 1281 46.29 MSLGDQYSDEICVPTNSIRKRKSRRRRDRSSVAETLAKWKAYNECVNSCNDGSKPIPKAPAKGSKKGCMKGKGGPLNSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDKAARMMYGQSARLNLPNITNSGQLKGFLLEDYLGLRNADSSTCSESTTTASNQSEVCVPEELVKPQLFHSNIKMEDGEGESRIGNLVNHIATPMSLGKEAEREHKHTHCEHRNDQAVHLGETVFPRMNQLQNFQMDGMFESRTGNQADHIATPVSFEKLAKHADIDATYRDQSNYQEILLGAEIPSLDELQNSQANEMFDVEELLGLIKIDSMHDSSFLLGNESGSNNMGPSQVSNLGSEKPSSLSYQFQNPDAKLLGCPQHMEQAPADVDYGLDFLKQGREEDLNAAADDCVGYLNYVGDLGF 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35265437 35267881 + Sed0005384.1 Sed11g2140 730786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2140 426 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 346 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Sed11g2140 426 SMART rav1_2 81 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2140 426 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2140 426 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2140 426 FunFam Ethylene-responsive transcription factor 2 80 139 - -
Sed11g2140 426 Pfam AP2 domain 81 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2140 426 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2140 426 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2140 426 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2140 426 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677(InterPro)
Sed11g2140 426 MobiDBLite consensus disorder prediction 345 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2523 Sed-Chr1:18865626 Sed11g2140 Sed-Chr11:35265437 3.90E-30 dispersed
Sed11g1066 Sed-Chr11:26050024 Sed11g2140 Sed-Chr11:35265437 3.40E-30 dispersed
Sed11g2140 Sed-Chr11:35265437 Sed12g1228 Sed-Chr12:8633561 6.80E-26 dispersed
Sed11g2140 Sed-Chr11:35265437 Sed11g2141 Sed-Chr11:35265437 3.90E-239 tandem
Sed01g0703 Sed-Chr1:5141012 Sed11g2140 Sed-Chr11:35265437 1.00E-47 transposed
Sed11g2140 Sed-Chr11:35265437 Sed14g0610 Sed-Chr14:6154357 8.90E-34 wgd
Sed11g2140 Sed-Chr11:35265437 Sed03g0366 Sed-Chr3:2200073 3.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40047 PF00847 AP2 2.10E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2140 K09286 - csv:101215431 525.398