Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g2140 | ATGAGTCTGGGTGATCAATATTCTGATGAGATTTGTGTACCTACCAATTCAATTAGGAAGAGGAAGTCACGGAGAAGGCGGGATCGATCGTCCGTGGCCGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGTGAATTCTTGTAATGATGGAAGCAAGCCTATTCCTAAAGCTCCGGCGAAAGGGTCGAAGAAGGGATGTATGAAAGGCAAAGGAGGACCTTTGAATTCACGTTGCAATTACAGAGGTGTGAGGCAGAGGACTTGGGGAAAGTGGGTTGCGGAGATTCGTGAACCCAATAGAGGGAGTAGGTTGTGGCTTGGTACCTTCCCGACTGCGATTGAAGCCGCTCTCGCTTATGACAAGGCTGCTCGGATGATGTATGGCCAGAGCGCTCGTTTGAATCTTCCAAACATTACAAACAGTGGACAGCTGAAAGGGTTTCTTTTAGAGGATTATTTGGGGCTGCGTAACGCGGATTCTTCTACGTGTTCTGAATCGACTACTACTGCCTCGAACCAATCCGAGGTGTGTGTGCCTGAGGAGTTAGTGAAGCCGCAACTTTTCCACTCGAACATTAAGATGGAAGATGGAGAAGGTGAATCCAGGATCGGGAATCTGGTCAATCACATTGCGACGCCAATGAGCTTAGGGAAGGAAGCGGAACGCGAGCATAAACATACACATTGTGAGCATAGAAATGATCAAGCTGTTCATTTAGGAGAAACTGTGTTTCCTAGAATGAATCAGTTGCAGAACTTTCAAATGGATGGAATGTTCGAGTCGAGGACGGGGAATCAGGCTGATCACATTGCGACGCCAGTGAGCTTTGAGAAGCTAGCGAAGCATGCTGATATTGATGCTACATATCGTGACCAGAGCAATTATCAAGAAATCTTATTAGGCGCTGAGATTCCTAGTTTGGATGAGCTGCAGAACTCTCAAGCAAATGAAATGTTCGATGTAGAGGAGCTTCTAGGTCTTATAAAAATCGATTCAATGCATGATTCGAGCTTCTTGCTGGGCAATGAGAGTGGTTCTAACAACATGGGGCCTTCCCAAGTTAGCAATCTTGGGTCTGAGAAACCATCAAGCTTATCATATCAGTTCCAAAATCCCGACGCAAAGCTGCTCGGATGCCCCCAACACATGGAGCAAGCTCCAGCCGATGTCGATTATGGACTCGATTTCTTGAAACAAGGGAGGGAGGAAGATCTGAATGCCGCAGCAGATGATTGTGTAGGATACTTGAATTACGTGGGTGATTTGGGGTTTTGA | 1281 | 46.29 | MSLGDQYSDEICVPTNSIRKRKSRRRRDRSSVAETLAKWKAYNECVNSCNDGSKPIPKAPAKGSKKGCMKGKGGPLNSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDKAARMMYGQSARLNLPNITNSGQLKGFLLEDYLGLRNADSSTCSESTTTASNQSEVCVPEELVKPQLFHSNIKMEDGEGESRIGNLVNHIATPMSLGKEAEREHKHTHCEHRNDQAVHLGETVFPRMNQLQNFQMDGMFESRTGNQADHIATPVSFEKLAKHADIDATYRDQSNYQEILLGAEIPSLDELQNSQANEMFDVEELLGLIKIDSMHDSSFLLGNESGSNNMGPSQVSNLGSEKPSSLSYQFQNPDAKLLGCPQHMEQAPADVDYGLDFLKQGREEDLNAAADDCVGYLNYVGDLGF | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 35265437 | 35267881 | + | Sed0005384.1 | Sed11g2140 | 730786 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g2140 | 426 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 17 | 346 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Sed11g2140 | 426 | SMART | rav1_2 | 81 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2140 | 426 | PRINTS | Ethylene responsive element binding protein signature | 82 | 93 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2140 | 426 | PRINTS | Ethylene responsive element binding protein signature | 104 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2140 | 426 | FunFam | Ethylene-responsive transcription factor 2 | 80 | 139 | - | - | |
Sed11g2140 | 426 | Pfam | AP2 domain | 81 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2140 | 426 | CDD | AP2 | 80 | 139 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2140 | 426 | ProSiteProfiles | AP2/ERF domain profile. | 81 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2140 | 426 | Gene3D | AP2/ERF domain | 81 | 139 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2140 | 426 | SUPERFAMILY | DNA-binding domain | 81 | 138 | IPR016177 | GO:0003677(InterPro) | |
Sed11g2140 | 426 | MobiDBLite | consensus disorder prediction | 345 | 367 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2523 | Sed-Chr1:18865626 | Sed11g2140 | Sed-Chr11:35265437 | 3.90E-30 | dispersed | |
Sed11g1066 | Sed-Chr11:26050024 | Sed11g2140 | Sed-Chr11:35265437 | 3.40E-30 | dispersed | |
Sed11g2140 | Sed-Chr11:35265437 | Sed12g1228 | Sed-Chr12:8633561 | 6.80E-26 | dispersed | |
Sed11g2140 | Sed-Chr11:35265437 | Sed11g2141 | Sed-Chr11:35265437 | 3.90E-239 | tandem | |
Sed01g0703 | Sed-Chr1:5141012 | Sed11g2140 | Sed-Chr11:35265437 | 1.00E-47 | transposed | |
Sed11g2140 | Sed-Chr11:35265437 | Sed14g0610 | Sed-Chr14:6154357 | 8.90E-34 | wgd | |
Sed11g2140 | Sed-Chr11:35265437 | Sed03g0366 | Sed-Chr3:2200073 | 3.50E-147 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40047 | PF00847 | AP2 | 2.10E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g2140 | K09286 | - | csv:101215431 | 525.398 |