Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2141 ATGTCTTCCTCCACTTTCACGGTCCGATTCCATTTCCTGGAGATTCCAAAAACCAGTTCGATCAACCAAGAAAAAGTAAAGTTTCAGAAAAACTTGAAGAAATTTGGAAACGATTTCGATCTGGAGACAATTGAAAGGAAGAGGAAGTCACGGAGAAGGCGGGATCGATCGTCCGTGGCCGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGTGAATTCTTGTAATGATGGAAGCAAGCCTATTCCTAAAGCTCCGGCGAAAGGGTCGAAGAAGGGATGTATGAAAGGCAAAGGAGGACCTTTGAATTCACGTTGCAATTACAGAGGTGTGAGGCAGAGGACTTGGGGAAAGTGGGTTGCGGAGATTCGTGAACCCAATAGAGGGAGTAGGTTGTGGCTTGGTACCTTCCCGACTGCGATTGAAGCCGCTCTCGCTTATGACAAGGCTGCTCGGATGATGTATGGCCAGAGCGCTCGTTTGAATCTTCCAAACATTACAAACAGTGGACAGCTGAAAGGGTTTCTTTTAGAGGATTATTTGGGGCTGCGTAACGCGGATTCTTCTACGTGTTCTGAATCGACTACTACTGCCTCGAACCAATCCGAGGTGTGTGTGCCTGAGGAGTTAGTGAAGCCGCAACTTTTCCACTCGAACATTAAGATGGAAGATGGAGAAGGTGAATCCAGGATCGGGAATCTGGTCAATCACATTGCGACGCCAATGAGCTTAGGGAAGGAAGCGGAACGCGAGCATAAACATACACATTGTGAGCATAGAAATGATCAAGCTGTTCATTTAGGAGAAACTGTGTTTCCTAGAATGAATCAGTTGCAGAACTTTCAAATGGATGGAATGTTCGAGTCGAGGACGGGGAATCAGGCTGATCACATTGCGACGCCAGTGAGCTTTGAGAAGCTAGCGAAGCATGCTGATATTGATGCTACATATCGTGACCAGAGCAATTATCAAGAAATCTTATTAGGCGCTGAGATTCCTAGTTTGGATGAGCTGCAGAACTCTCAAGCAAATGAAATGTTCGATGTAGAGGAGCTTCTAGGTCTTATAAAAATCGATTCAATGCATGATTCGAGCTTCTTGCTGGGCAATGAGAGTGGTTCTAACAACATGGGGCCTTCCCAAGTTAGCAATCTTGGGTCTGAGAAACCATCAAGCTTATCATATCAGTTCCAAAATCCCGACGCAAAGCTGCTCGGATGCCCCCAACACATGGAGCAAGCTCCAGCCGATGTCGATTATGGACTCGATTTCTTGAAACAAGGGAGGGAGGAAGATCTGAATGCCGCAGCAGATGATTGTGTAGGATACTTGAATTACGTGGGTGATTTGGGGTTTTGA 1362 45.89 MSSSTFTVRFHFLEIPKTSSINQEKVKFQKNLKKFGNDFDLETIERKRKSRRRRDRSSVAETLAKWKAYNECVNSCNDGSKPIPKAPAKGSKKGCMKGKGGPLNSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDKAARMMYGQSARLNLPNITNSGQLKGFLLEDYLGLRNADSSTCSESTTTASNQSEVCVPEELVKPQLFHSNIKMEDGEGESRIGNLVNHIATPMSLGKEAEREHKHTHCEHRNDQAVHLGETVFPRMNQLQNFQMDGMFESRTGNQADHIATPVSFEKLAKHADIDATYRDQSNYQEILLGAEIPSLDELQNSQANEMFDVEELLGLIKIDSMHDSSFLLGNESGSNNMGPSQVSNLGSEKPSSLSYQFQNPDAKLLGCPQHMEQAPADVDYGLDFLKQGREEDLNAAADDCVGYLNYVGDLGF 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35265437 35267881 + Sed0005384.2 Sed11g2141 730787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2141 453 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2141 453 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2141 453 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2141 453 MobiDBLite consensus disorder prediction 372 394 - -
Sed11g2141 453 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677(InterPro)
Sed11g2141 453 CDD AP2 107 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2141 453 Pfam AP2 domain 108 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2141 453 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2141 453 SMART rav1_2 108 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2141 453 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Sed11g2141 453 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 45 373 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0703 Sed-Chr1:5141012 Sed11g2141 Sed-Chr11:35265437 1.00E-47 dispersed
Sed03g0366 Sed-Chr3:2200073 Sed11g2141 Sed-Chr11:35265437 4.00E-148 dispersed
Sed11g2141 Sed-Chr11:35265437 Sed14g0610 Sed-Chr14:6154357 9.40E-34 dispersed
Sed11g2141 Sed-Chr11:35265437 Sed11g2144 Sed-Chr11:35286770 5.90E-20 proximal
Sed11g2140 Sed-Chr11:35265437 Sed11g2141 Sed-Chr11:35265437 3.90E-239 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40048 PF00847 AP2 2.30E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2141 K09286 - csv:101215431 530.406