Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2154 ATGAAATGTTACAAATTTGGGCTGCTTGTAATCTCAATTCTTCTTCTTAGGCTTCCTTTTGCCTCAGCAGCACTTGGAGGAAATGACACAGACAGGCTTGCGTTGCTATCTTTCAAGTCTGAGATAACTGTTGATCCATTTGGTTTGTTCATTTCTTGGAATGAATCAGTTCATTTCTGCAATTGGGAAGGTGTTAAATGCAGTCCAAAACACAGAGTTGTTGAGTTAAATCTTCCTTCTTTTCGATTCGTCGGTCGATTATCACCTTCTATAGGGAACTTGAGCTTCCTTACAACATTAAACCTTCAAAACAATAGCTTTGGAGGGAAAGTTCCACAAGAGATAGGTAGCTTGAGAAGGATGAAAGTATTGGAGTTGGACATCAACCACTTTGTAGGGGAGATTCCAATCACCATATCAAATTGCTCAGAGCTTCAATACATTGGATTTACAAGCAACAATTTCACTGGCTTACTGCCCAAGGAACTTGGATTGTTGACTAAGCTTGAAGATGTTGACTTGTCTTCCAACAAACTGTTTGGAGAATTACCTGAATCACTTGGAAATCTTTCATCTTTAACTGGCTTCTGGGCCACTCTGAATAATTTTAATGGCAATATTCCTAGTAGTTTTGGGAAGTTGAAAAAATTGACAGCTCTTTCTATTGGGGCAAACAAACTCACCGGTACTATCCCTTCCTCAATCTACAACCTTTCATCCATAAAACTCTTATCACTTCCTGTAAATCAACTTGAGGGTAGGCTCCATACAGATTTAGGCCTCAACTTCCCAAACCTTCAGACTCTTAAAATCTTCACCAATCAATTCAGTGGACCAATTCCTTTTACACTATCCAATGCCTCAAAACTTGTGGCGTTTAACATCGCCTCAAACATGTTTACAGGGAAAGTTCCTAGCTTAGCGAGTATGCGTGAACTCAAGGATCTTGCATTATTTGACAACAATCTTGTTGACGACATAAACTTTTTGTCTACTCTTGTCAACTGCACCAACTTGACTAATATAGCCATTAGTGACAACAAATTTGGTGGGATCTTTCCAAAATACATAAGCAACTTCTCAACAAAGCTCCAGACTATTGGATTTGGAAATAATGATATTCATGGAACCATTCCAACTGATATTGGGAATCTCATTGGATTAGAAGCATTGGGTCTGGAATACAACCAACTGACTGGTCCCATACCAAGTTCAATAGGAAAACTAAAAAAGTTGAATTCTCTCTATTTGAATATGAACAAACTCTCTGGGAAAATCCCCCAATCTTTTGGAAACATGTCTTCATTAGGGTTATGTAATTTGAGGATAAACAACTTGACAGGAGCCATTCCACAGAGTCTTGGAGAAAACAAAAATTTGTTGATGCTAGCACTTTCTCAAAACCATCTAACTGGTACAATACCAAAAGAATTGTTTAGTGTATCATCTTTATCTATCGGTCTAGATCTGTCTGAGAATTATTTGACTGGTTCAATTCCATTGGAAGTGGGAAAGTTGGTAAACCTTGGTTACTTGTATATCACTGACAACATGCTAACTGGGGTTATTCCACCTAGTCTCAGTTCTTGCACAATCTTAGAATTTCTACACTTGGAAGGTAATTTCCTTGAGGGCTCTATACCTCAGTCTTTGAGCTTCTTGAGAGGTATCGAAGAACTCGATCTTTCTCGCAACAATTTGTCGGGAAAAATTCCATCATATTTGCAGGAGCTTGAGTTTTTAAAATACTTAAATTTATCTTTCAACAATCTGGAAGGTGAAGTTCCTACACAAGGAGTGTTCAAAAATGAAACTGCATTTTCCATTATTGGAAACAAGCTACTTTGTGGTGGTTTGCCTGAATGGAATCTATCAAGATGCAGTTTGGAAAATCCCACAAAGCAGAAACTAACTTTGGGACTGAAGGTTATCATATCAGTTTCTAGTGGATTGGTGGGAAGTGTTTTGGTCATCTGTATTGTTCTTCTTTTTTGGTCAAGGAAGAAAAAGAATAAGGAGGATTCAAATCCATTACCAAAAGTTTCATATCTTGTTGTATCTTATAATGACATTTTCAAAGCCACCAATGAGTTCTCTCCCAATAATCTAATTGGAGCTGGTGGTTATGGGTCTGTCTATAAAGGAACTCTCAGTCAGGATGGAAGTGTTGTTGCAATTAAAGTGTTTAATCTTCAGCATAGAAGAGCTTCAAAGAGTTTTTTGGCAGAATGTGAAGCCCTTAGAAACCTACGACATCGGAACCTTGTCAAGATTCTCTCAACATGTTCAAGTATCGATTTTCAAGGCAATGATTTTATAGCACTGGTTTATGATTTCATGGTTAATGGTAGCCTCGAGAATTGGCTACATCCAGATGGTAACTTAAACCAGGAAGAGGGCCAAAGATTTTTAACTATCATGGATAGGCTAAGCATTGCCATTGATGTTGCTAGTGCACTAGATTATTTGCACAATGGTAGTCATATGCCAATAGTTCATTGTGACTTGAAGCCTAGCAATGTTCTTTTGGATGTGGACATGACTGCTCACCTTGGAGATTTTGGACTTGCAAAAATCATGGCTGAAACTTCCTCTGAAAACAGATCAACTGAAACCGGATCCATCGGTATCAGAGGCTCTATTGGATATGCACCTCCAGAGTATGCCATGGGAAGCGACGTTTCGACGTATGGAGATGTGTACAGTTACGGCATCCTGTTGTTGGAAATGTTCACTGGAAAGAGGCCAACTGATGAAATGTTCATTAATGACTTAACCTTAAACAACTATGTTCTTTCCACTTTACCTGACAGAGTTGAACAAATAGTAGATCCAACAATGAGCCATCAAGAACTAGAGGGAGCGGGCAACAATGATACTGATCTTCAAAACAACTATGTTCTTACAACTTCACTCAACCAGGTAGAACAAATAGCAAATCCAACTACTAGCTTTCAAGAAATGGAGGGAACAAGCAACAATAATACTATTTTGCAGGCTAATCAATCACTCAGAATCAGAAAATGCTTGTTTTCCATTTTCAGTGTAGGAGTTGCTTGTTCGGCTCAAGTACCTGGTCAAAGAATGAATATTAGTGATGTTGTTGCCCAACTACGCCTTGCAAGACAAAACATTTCATAG 3141 38.4 MKCYKFGLLVISILLLRLPFASAALGGNDTDRLALLSFKSEITVDPFGLFISWNESVHFCNWEGVKCSPKHRVVELNLPSFRFVGRLSPSIGNLSFLTTLNLQNNSFGGKVPQEIGSLRRMKVLELDINHFVGEIPITISNCSELQYIGFTSNNFTGLLPKELGLLTKLEDVDLSSNKLFGELPESLGNLSSLTGFWATLNNFNGNIPSSFGKLKKLTALSIGANKLTGTIPSSIYNLSSIKLLSLPVNQLEGRLHTDLGLNFPNLQTLKIFTNQFSGPIPFTLSNASKLVAFNIASNMFTGKVPSLASMRELKDLALFDNNLVDDINFLSTLVNCTNLTNIAISDNKFGGIFPKYISNFSTKLQTIGFGNNDIHGTIPTDIGNLIGLEALGLEYNQLTGPIPSSIGKLKKLNSLYLNMNKLSGKIPQSFGNMSSLGLCNLRINNLTGAIPQSLGENKNLLMLALSQNHLTGTIPKELFSVSSLSIGLDLSENYLTGSIPLEVGKLVNLGYLYITDNMLTGVIPPSLSSCTILEFLHLEGNFLEGSIPQSLSFLRGIEELDLSRNNLSGKIPSYLQELEFLKYLNLSFNNLEGEVPTQGVFKNETAFSIIGNKLLCGGLPEWNLSRCSLENPTKQKLTLGLKVIISVSSGLVGSVLVICIVLLFWSRKKKNKEDSNPLPKVSYLVVSYNDIFKATNEFSPNNLIGAGGYGSVYKGTLSQDGSVVAIKVFNLQHRRASKSFLAECEALRNLRHRNLVKILSTCSSIDFQGNDFIALVYDFMVNGSLENWLHPDGNLNQEEGQRFLTIMDRLSIAIDVASALDYLHNGSHMPIVHCDLKPSNVLLDVDMTAHLGDFGLAKIMAETSSENRSTETGSIGIRGSIGYAPPEYAMGSDVSTYGDVYSYGILLLEMFTGKRPTDEMFINDLTLNNYVLSTLPDRVEQIVDPTMSHQELEGAGNNDTDLQNNYVLTTSLNQVEQIANPTTSFQEMEGTSNNNTILQANQSLRIRKCLFSIFSVGVACSAQVPGQRMNISDVVAQLRLARQNIS 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35374473 35377823 - Sed0023988.1 Sed11g2154 730800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2154 1046 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Sed11g2154 1046 Gene3D Phosphorylase Kinase; domain 1 680 779 - -
Sed11g2154 1046 FunFam LRR receptor-like serine/threonine-protein kinase EFR 668 779 - -
Sed11g2154 1046 Pfam Leucine Rich Repeat 388 409 IPR001611 GO:0005515(InterPro)
Sed11g2154 1046 Pfam Leucine Rich Repeat 557 578 IPR001611 GO:0005515(InterPro)
Sed11g2154 1046 Pfam Leucine Rich Repeat 97 118 IPR001611 GO:0005515(InterPro)
Sed11g2154 1046 Pfam Leucine Rich Repeat 581 596 IPR001611 GO:0005515(InterPro)
Sed11g2154 1046 Pfam Leucine Rich Repeat 508 530 IPR001611 GO:0005515(InterPro)
Sed11g2154 1046 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515(InterPro)
Sed11g2154 1046 Pfam Leucine Rich Repeat 168 190 IPR001611 GO:0005515(InterPro)
Sed11g2154 1046 SMART serkin_6 698 1040 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2154 1046 SMART LRR_sd22_2 409 435 - -
Sed11g2154 1046 SMART LRR_sd22_2 336 362 - -
Sed11g2154 1046 SMART LRR_sd22_2 166 192 - -
Sed11g2154 1046 SMART LRR_sd22_2 214 240 - -
Sed11g2154 1046 SMART LRR_sd22_2 554 580 - -
Sed11g2154 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2154 1046 SUPERFAMILY Protein kinase-like (PK-like) 675 1039 IPR011009 -
Sed11g2154 1046 Pfam Protein kinase domain 701 918 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2154 1046 ProSiteProfiles Protein kinase domain profile. 698 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2154 1046 Gene3D Ribonuclease Inhibitor 27 307 IPR032675 -
Sed11g2154 1046 Gene3D Ribonuclease Inhibitor 308 631 IPR032675 -
Sed11g2154 1046 SUPERFAMILY L domain-like 30 328 - -
Sed11g2154 1046 SUPERFAMILY L domain-like 334 617 - -
Sed11g2154 1046 SMART LRR_typ_2 506 530 IPR003591 -
Sed11g2154 1046 SMART LRR_typ_2 166 190 IPR003591 -
Sed11g2154 1046 SMART LRR_typ_2 214 238 IPR003591 -
Sed11g2154 1046 SMART LRR_typ_2 578 603 IPR003591 -
Sed11g2154 1046 SMART LRR_typ_2 94 118 IPR003591 -
Sed11g2154 1046 SMART LRR_typ_2 409 432 IPR003591 -
Sed11g2154 1046 SMART LRR_typ_2 554 577 IPR003591 -
Sed11g2154 1046 Gene3D Transferase(Phosphotransferase) domain 1 780 1046 - -
Sed11g2154 1046 PANTHER OS04G0122200 PROTEIN 45 1038 IPR051809 -
Sed11g2154 1046 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524(InterPro)
Sed11g2154 1046 FunFam LRR receptor-like serine/threonine-protein kinase EFR 328 633 - -
Sed11g2154 1046 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 66 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1182 Sed-Chr4:24263642 Sed11g2154 Sed-Chr11:35374473 3.40E-95 dispersed
Sed04g1183 Sed-Chr4:24263642 Sed11g2154 Sed-Chr11:35374473 1.90E-88 dispersed
Sed08g0563 Sed-Chr8:3820131 Sed11g2154 Sed-Chr11:35374473 8.50E-61 dispersed
Sed10g1217 Sed-Chr10:25440539 Sed11g2154 Sed-Chr11:35374473 6.10E-09 dispersed
Sed11g2154 Sed-Chr11:35374473 Sed12g2273 Sed-Chr12:32975122 6.70E-51 dispersed
Sed11g2156 Sed-Chr11:35385831 Sed11g2154 Sed-Chr11:35374473 1.00E-20 dispersed
Sed11g2153 Sed-Chr11:35367549 Sed11g2154 Sed-Chr11:35374473 2.60E-225 tandem
Sed11g2154 Sed-Chr11:35374473 Sed11g2155 Sed-Chr11:35379927 6.50E-264 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79941 PF00069 Pkinase 1.10E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2154 - - - 0.0