Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g2167 | ATGGCGACGACTGAGAATACGGTTTTGCAATTTTCACAGTCTTCTAACACAATTTCTGCAAAAGTTCACCCTCTGGTTATCTTCAACATTTGCGATTGCTATGTGAGGCGCCCGGACCAGGCGGACCGTGTGATCGGTACTCTTCTCGGCTCTGTTTTGCCTGATGGAACCGTCGATATTCGCAACTCTTATGCTGTTCCTCATAACGAGTTCTCGGACCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAGTTCTCATCTAAAAGTTAATCCAAAGGAAGTTATTGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACATGACTTTTATTCTAGAGAAGTTGCAAACCCTGTTCACCTCACTGTTGATACTGGATTTAAAAATGGAGAAGGGACTATAAAAGCCTATGTCTCTGTCAATTTGTCTCTGGGTGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATGTACTGAAGACAACTTCAGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCCTCAATGGAGAGATTACTTGGGTTAATTGATGATATTTATAAATATGTTGATAATGTTGTGGAAGGGCATGTTGAGCCAGACAACACGATTGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTAAGCCTTGCCGAAAAGTTGAATACGGCTGCCCAGGTTCTGTAA | 858 | 42.07 | MATTENTVLQFSQSSNTISAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHLKVNPKEVIVGWYSTGMGVTGGSALIHDFYSREVANPVHLTVDTGFKNGEGTIKAYVSVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDVLKTTSVDKLPNDLEGMEASMERLLGLIDDIYKYVDNVVEGHVEPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQVL | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 35447540 | 35450897 | + | Sed0000856.1 | Sed11g2167 | 730813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g2167 | 285 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 14 | 281 | - | GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER) | |
Sed11g2167 | 285 | ProSiteProfiles | MPN domain profile. | 20 | 151 | IPR037518 | - | |
Sed11g2167 | 285 | SMART | pad1_6 | 19 | 150 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Sed11g2167 | 285 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 20 | 122 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Sed11g2167 | 285 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 18 | 281 | IPR027531 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Sed11g2167 | 285 | Pfam | Maintenance of mitochondrial structure and function | 172 | 279 | IPR024969 | - | |
Sed11g2167 | 285 | FunFam | Eukaryotic translation initiation factor 3 subunit F | 8 | 186 | - | - | |
Sed11g2167 | 285 | Gene3D | Cytidine Deaminase, domain 2 | 7 | 186 | - | - | |
Sed11g2167 | 285 | CDD | MPN_eIF3f | 21 | 278 | IPR027531 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g2167 | Sed-Chr11:35447540 | Sed14g0647 | Sed-Chr14:6531166 | 4.40E-29 | dispersed | |
Sed11g2167 | Sed-Chr11:35447540 | Sed11g2168 | Sed-Chr11:35447540 | 6.90E-99 | tandem | |
Sed11g2167 | Sed-Chr11:35447540 | Sed14g0646 | Sed-Chr14:6531166 | 4.40E-29 | wgd | |
Sed11g2167 | Sed-Chr11:35447540 | Sed03g0395 | Sed-Chr3:2387143 | 1.80E-152 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g2167 | K03249 | - | csv:101205957 | 545.043 |