Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2167 ATGGCGACGACTGAGAATACGGTTTTGCAATTTTCACAGTCTTCTAACACAATTTCTGCAAAAGTTCACCCTCTGGTTATCTTCAACATTTGCGATTGCTATGTGAGGCGCCCGGACCAGGCGGACCGTGTGATCGGTACTCTTCTCGGCTCTGTTTTGCCTGATGGAACCGTCGATATTCGCAACTCTTATGCTGTTCCTCATAACGAGTTCTCGGACCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAGTTCTCATCTAAAAGTTAATCCAAAGGAAGTTATTGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACATGACTTTTATTCTAGAGAAGTTGCAAACCCTGTTCACCTCACTGTTGATACTGGATTTAAAAATGGAGAAGGGACTATAAAAGCCTATGTCTCTGTCAATTTGTCTCTGGGTGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATGTACTGAAGACAACTTCAGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCCTCAATGGAGAGATTACTTGGGTTAATTGATGATATTTATAAATATGTTGATAATGTTGTGGAAGGGCATGTTGAGCCAGACAACACGATTGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTAAGCCTTGCCGAAAAGTTGAATACGGCTGCCCAGGTTCTGTAA 858 42.07 MATTENTVLQFSQSSNTISAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHLKVNPKEVIVGWYSTGMGVTGGSALIHDFYSREVANPVHLTVDTGFKNGEGTIKAYVSVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDVLKTTSVDKLPNDLEGMEASMERLLGLIDDIYKYVDNVVEGHVEPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQVL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35447540 35450897 + Sed0000856.1 Sed11g2167 730813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2167 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 281 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Sed11g2167 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Sed11g2167 285 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Sed11g2167 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 122 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Sed11g2167 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed11g2167 285 Pfam Maintenance of mitochondrial structure and function 172 279 IPR024969 -
Sed11g2167 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Sed11g2167 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Sed11g2167 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2167 Sed-Chr11:35447540 Sed14g0647 Sed-Chr14:6531166 4.40E-29 dispersed
Sed11g2167 Sed-Chr11:35447540 Sed11g2168 Sed-Chr11:35447540 6.90E-99 tandem
Sed11g2167 Sed-Chr11:35447540 Sed14g0646 Sed-Chr14:6531166 4.40E-29 wgd
Sed11g2167 Sed-Chr11:35447540 Sed03g0395 Sed-Chr3:2387143 1.80E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2167 K03249 - csv:101205957 545.043