Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2168 ATGGAACCGTCGATATTCGCAACTCTTATGCTGTTCCTCATAACGAGTTCTCGGACCAGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACATGACTTTTATTCTAGAGAAGTTGCAAACCCTGTTCACCTCACTGTTGATACTGGATTTAAAAATGGAGAAGGGACTATAAAAGCCTATGTCTCTGTCAATTTGTCTCTGGGTGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATGTACTGAAGACAACTTCAGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCCTCAATGGAGAGATTACTTGGGTTAATTGATGATATTTATAAATATGTTGATAATGTTGTGGAAGGGCATGTTGAGCCAGACAACACGATTGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTAAGCCTTGCCGAAAAGTTGAATACGGCTGCCCAGGTTCTGTAA 615 41.63 MEPSIFATLMLFLITSSRTRYSTGMGVTGGSALIHDFYSREVANPVHLTVDTGFKNGEGTIKAYVSVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDVLKTTSVDKLPNDLEGMEASMERLLGLIDDIYKYVDNVVEGHVEPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQVL 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35447540 35450897 + Sed0000856.2 Sed11g2168 730814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2168 204 Gene3D Cytidine Deaminase, domain 2 20 106 - -
Sed11g2168 204 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 21 200 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Sed11g2168 204 Pfam Maintenance of mitochondrial structure and function 91 198 IPR024969 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0395 Sed-Chr3:2387143 Sed11g2168 Sed-Chr11:35447540 3.90E-94 dispersed
Sed11g2167 Sed-Chr11:35447540 Sed11g2168 Sed-Chr11:35447540 6.90E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2168 K03249 - csv:101205957 347.821