Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2183 ATGACGACGATCGGAGACTCCCACGTTGTCGTCCAAGAGCTTCAAGAACGACCTCCCTGTGTTTCCACCGCCGGCAACGACGCCTCGCCGGATTCTGAGGATGTGCGGCGGTGCTCCGGCCAGTCTAGGGCTGAGATTGTGGGAGTGGCGGCGGCGGTGGAGCAAAGAAGGGGCTCCTCTGCTTCTGAGTGTTCTGTTGAGATGGATCTGGAATGTGGGTTGGCGGAGATTAAGGTACATTTGGCCAAAATCGAAAGGGATTGTCGGATTTGTCATTTGAGTATGGATGCTTCTAATCATGAATCTGGAATCCCTATTGAGTTGGGTTGTTCATGTAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGATATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTGGTACCCATGAAGCTGATTCGACTGAGCAGCGCAACGAATCAAACGACGCATCAACAGCAACCGCTGCAGCTACTGTCGTAGTGCCACCGCATTCTATAGACGCTCGAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 648 50.62 MTTIGDSHVVVQELQERPPCVSTAGNDASPDSEDVRRCSGQSRAEIVGVAAAVEQRRGSSASECSVEMDLECGLAEIKVHLAKIERDCRICHLSMDASNHESGIPIELGCSCKEDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTHEADSTEQRNESNDASTATAAATVVVPPHSIDARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35549506 35552965 + Sed0019816.1 Sed11g2183 730829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2183 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 149 IPR013083 -
Sed11g2183 215 SMART ringv_2 87 140 IPR011016 GO:0008270(InterPro)
Sed11g2183 215 ProSiteProfiles Zinc finger RING-CH-type profile. 80 146 IPR011016 GO:0008270(InterPro)
Sed11g2183 215 Pfam RING-variant domain 88 139 IPR011016 GO:0008270(InterPro)
Sed11g2183 215 SUPERFAMILY RING/U-box 85 142 - -
Sed11g2183 215 PANTHER ZINC FINGER, RING-CH-TYPE 29 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0773 Sed-Chr2:45443921 Sed11g2183 Sed-Chr11:35549506 3.90E-52 dispersed
Sed03g3064 Sed-Chr3:47399729 Sed11g2183 Sed-Chr11:35549506 2.20E-09 dispersed
Sed03g3065 Sed-Chr3:47399729 Sed11g2183 Sed-Chr11:35549506 2.20E-09 dispersed
Sed11g2183 Sed-Chr11:35549506 Sed13g1442 Sed-Chr13:19628260 3.00E-38 dispersed
Sed11g2183 Sed-Chr11:35549506 Sed03g0408 Sed-Chr3:2457552 2.50E-61 wgd
Sed11g2183 Sed-Chr11:35549506 Sed04g1211 Sed-Chr4:25097352 3.60E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2183 - - - 0.0