Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2208 ATGTCATCAATTTCCCTCCGGCTACTCCTCTTCGCGGCGGCGCTACTCGCCGCCGCAGAAACAGCCACCTCGGCCACCCGATGCCCGGACTGCGGCGCCGCCGCCGTTCCCTACCCTCTAAGCACCAGCCCAACCTGTGGGGACCAATCATACAAGATCCGGTGCGACGCAGGCTCACTCAAATTCGACACGCTCAACAACACGTACCCAATCATCTCGATCAACCCCTCGATCCAACGGCTGGTCATCCGCCCCTCTAACTTCCTCCCAAACACCTGCGTCACAGAGGATATCGCCACCGACGGAATCAAACTGAACAGCTCAGCACCGTTCAACGTGACGAGTGGGAACACGATCCTCTACTTCAACTGTACGGATTCTCTGTTACGCTCGCCGTTGAACTGCGCGTCCACGAGTCTCTGCCACTCTTACGTCAACGGCACGACCGGAGCGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCGGGCGGGTCGTCCAATTCGTACATGATTCGGGTCAGGGACTCGGGTTGTAGCGCCTACACGAGCTTTGTGAACTTGAACCCGGGTTTGGGTTTGTTGCAGTGGCCCGAACCGGGTCTGGAGTTGCAGTGGCTGTCGCCGATGGAACCGGTTTGTAAATCGCAGGCTGATTGCGATGGGAACGCGGTTTGCGGCGTTGACCGGAACGGGTTGGGTTTGAGAAGGTGTCTCTGTAATTCGGGTTTCGTGTGGGACCCGATTGTTGGACTCTGCTCCCAAAATACGTGTCATGATCCTGACGGCTGTAAAAAGTCATGGGCTGCTCTAATAGCCGGCTTAGTGTCCGGCGTGGGCGCGGCGGCGATTGTATTAGTAATAGCAATATTACTATACAACCGCCACAGACGAGCAAAAGAAGCTCAAGAGCGTTTAACAAGGGAGCGAGAAGCAATTCTAAACTCCCACGGCGGAACCGGAAGGGCAGCAAAGATCTTCACTGGCAAAGAGATCAAGAGAGCCACCCACAACTTCGCTCATGACCGCCTTCTCGGCGTCGGCGGGTACGGCGAGGTCTTCAAAGGTGTCCTCGGCGACGGCACAACCGTGGCCGTCAAGTGCGCCAAGCTCGGAAACGCCAAGGGCACCGATCAAGTGCTGAATGAGGTTCGCATTTTGTGTCAAGTGAACCACCGGAGCCTTGTCCGGCTACTTGGCTGCTGCGTTGAACTTGAACAGCCAATTTTGGTGTATGAATATATCCCTAACGGTACTCTACTTGACCGTTTACTAGGTACTAATGACACGAGCCCATTATCATGGAATCAACGACTCCGGATTGCGCAAGGTACAGCAGAAGGATTAGCATATCTTCATTTCTCAGCAATCCCACCCATCTACCATCGTGATGTAAAATCTAGCAATATCTTACTAGATGACAAGCTCGATCCAAAAGTCTCCGATTTTGGGCTTTCAAGATTGGCCGAAACAGACCTAAGCCACATCTCAACTTGCGCCCAAGGGACTCTTGGGTATCTCGATCCTGAATACTATCGCAACTATCAGTTGACAGACAAGAGTGATGTGTATAGCTTTGGAGTCGTTTTGTTAGAACTGGTGACGTCAGAAAAGGCAATCGATTTTAATCGAGATGCCGATGATGTAAACTTGGCCGTTTATGTGCAACGATTGGTAGACGAAGAGAAATTGGCAGATGCCATCGATTTGAGGTTGAAAAAGGGAGCTAGTGACATGGAGGTTGAGACTATGAAGGCTTTGGGATTTTTGGCAATGGGATGCTTGGAGGAGAGGAGACAAAATCGACCTTCTATGAAAGAAGTGGTGGAAGAGATCGAGTATATCATTAGCATCGCCTCCGCTAAGGGTCAACAATAA 1884 52.6 MSSISLRLLLFAAALLAAAETATSATRCPDCGAAAVPYPLSTSPTCGDQSYKIRCDAGSLKFDTLNNTYPIISINPSIQRLVIRPSNFLPNTCVTEDIATDGIKLNSSAPFNVTSGNTILYFNCTDSLLRSPLNCASTSLCHSYVNGTTGAAACEAAPLCCTFRAGGSSNSYMIRVRDSGCSAYTSFVNLNPGLGLLQWPEPGLELQWLSPMEPVCKSQADCDGNAVCGVDRNGLGLRRCLCNSGFVWDPIVGLCSQNTCHDPDGCKKSWAALIAGLVSGVGAAAIVLVIAILLYNRHRRAKEAQERLTREREAILNSHGGTGRAAKIFTGKEIKRATHNFAHDRLLGVGGYGEVFKGVLGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDRLLGTNDTSPLSWNQRLRIAQGTAEGLAYLHFSAIPPIYHRDVKSSNILLDDKLDPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELVTSEKAIDFNRDADDVNLAVYVQRLVDEEKLADAIDLRLKKGASDMEVETMKALGFLAMGCLEERRQNRPSMKEVVEEIEYIISIASAKGQQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35672717 35677603 - Sed0025132.1 Sed11g2208 730854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2208 627 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Sed11g2208 627 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2208 627 SMART serkin_6 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2208 627 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 617 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed11g2208 627 CDD STKc_IRAK 347 615 - -
Sed11g2208 627 FunFam Wall-associated receptor kinase-like 20 302 416 - -
Sed11g2208 627 Pfam Protein tyrosine and serine/threonine kinase 344 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2208 627 FunFam Wall-associated receptor kinase-like 20 417 627 - -
Sed11g2208 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2208 627 SUPERFAMILY Protein kinase-like (PK-like) 326 614 IPR011009 -
Sed11g2208 627 Gene3D Phosphorylase Kinase; domain 1 316 416 - -
Sed11g2208 627 Gene3D Transferase(Phosphotransferase) domain 1 417 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2208 Sed-Chr11:35672717 Sed14g0522 Sed-Chr14:5123961 4.30E-170 dispersed
Sed11g2208 Sed-Chr11:35672717 Sed02g0586 Sed-Chr2:43527057 1.30E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79943 PF07714 PK_Tyr_Ser-Thr 1.80E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2208 - - - 0.0