Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2210 ATGGCCGAGATTTGCTTCGTCGGAGATGGCGAGCCCTCGCCCCCGCCGAGTTCTCAAGATTCTCGCCGGAAAGTCGACATTCTTCACCTGAATGCCGCCGCCGCCGCCGATGTCACCCCTTCCTCCTCCTCTGCGCCGCCGCAGACCGCCCGGAAACGCCGGAGATTTCATCACTGTCCACGGCGGAGCCATAATGATGCAGAGGAAAGCAGCCTGCAGAGAAATCTTGATGTTGAGAGTGTTAAGTACGGAGTTACCTCTGTTTGTGGAAGAAGAAGAGAAATGGAGGACACCGTTTCTGTTCATCCTTCTTTGGCTACTCTAAAAAATCAACCCCAAATTCCTCTCCACTTTTTTGGTGTTTTTGATGGCCATGGCTGCTCTCATGTTTCGATGAATTGTGAGAATCGGATGCATGAAATCGTGAAGGAAGAGATTGAGAGAGAAATGGGAGAAACAGAGGATTGGAAGAAATTGATGCAACAAAGCTTTGATCGAATGGATGAGGAAGTGAAGGAATATCGGAATGATTTAGAACACAAACAAACTTCGAATATTATTAGTTGTAGATGTGAACGTCAGACTCCTCATCAGTACGATACCGTTGGATCAACGGCTCTTGTCGCCGTCGTAACTGCCGACAAATTGATTGTTGCTAACTGCGGCGATTCCCGCGCCGTGCTTTGCCGGAGAACCGCCGTCATTCCTCTCTCCTCCGATCATAAGCCTGATCGTCCGGATGAATTGTCTCGTATCGAATCAATGGGTGGTCGTGTGATATATTGGGATGGGGCAAGAGTTCTTGGAGTGTTAGCAACGTCGAGGGCTATAGGTGACGGTTATCTCAAACCGTATGTTATATCAGAACCAGAGGTAGTAGTAATGGATCGAGAATTGGGAGATGAATTTATCATATTGGCAAGCGATGGGCTGTGGGACGTGATTTCTAATGAATCTGCTTGCGAGACAGTCCGAACATGTATGCGGGCCCAACGATCGACATCATTGCCGGGTTCTACAGGCTTCGGCTCCGATAAAGCTTGCTTGAATGCCTCCATTGTGCTGACCAAATTGGCCATGGCCAAGCAAAGTTTAGATAATATTAGCATAGTGGTGATAGATTTGAGAAGTGGTCATCATAAGTAA 1146 47.91 MAEICFVGDGEPSPPPSSQDSRRKVDILHLNAAAAADVTPSSSSAPPQTARKRRRFHHCPRRSHNDAEESSLQRNLDVESVKYGVTSVCGRRREMEDTVSVHPSLATLKNQPQIPLHFFGVFDGHGCSHVSMNCENRMHEIVKEEIEREMGETEDWKKLMQQSFDRMDEEVKEYRNDLEHKQTSNIISCRCERQTPHQYDTVGSTALVAVVTADKLIVANCGDSRAVLCRRTAVIPLSSDHKPDRPDELSRIESMGGRVIYWDGARVLGVLATSRAIGDGYLKPYVISEPEVVVMDRELGDEFIILASDGLWDVISNESACETVRTCMRAQRSTSLPGSTGFGSDKACLNASIVLTKLAMAKQSLDNISIVVIDLRSGHHK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35695923 35698006 - Sed0025126.1 Sed11g2210 730856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2210 381 ProSiteProfiles PPM-type phosphatase domain profile. 82 375 IPR001932 -
Sed11g2210 381 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169(InterPro)
Sed11g2210 381 Pfam Protein phosphatase 2C 82 368 IPR001932 -
Sed11g2210 381 Gene3D - 73 380 IPR036457 -
Sed11g2210 381 SUPERFAMILY PP2C-like 80 376 IPR036457 -
Sed11g2210 381 PANTHER PROTEIN PHOSPHATASE 66 374 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed11g2210 381 CDD PP2Cc 81 375 IPR001932 -
Sed11g2210 381 FunFam Protein phosphatase 2C 50 80 381 - -
Sed11g2210 381 Coils Coil 157 184 - -
Sed11g2210 381 SMART PP2C_4 69 373 IPR001932 -
Sed11g2210 381 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1124 Sed-Chr1:8384997 Sed11g2210 Sed-Chr11:35695923 1.50E-94 dispersed
Sed01g1125 Sed-Chr1:8384997 Sed11g2210 Sed-Chr11:35695923 2.10E-62 dispersed
Sed07g0840 Sed-Chr7:6130534 Sed11g2210 Sed-Chr11:35695923 1.70E-64 dispersed
Sed11g2210 Sed-Chr11:35695923 Sed12g1820 Sed-Chr12:29419803 1.10E-54 dispersed
Sed11g2210 Sed-Chr11:35695923 Sed03g0755 Sed-Chr3:4558600 9.60E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2210 K14497 - csv:101220425 456.832