Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2218 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGGTTTCTACCTGAGCGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCGAACTCACTTGCATTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAACTCTCACCAGATGCCACCTAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAAGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGCCTTCTTGGTCACACTGAATTGAGGGTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTTTGCTTGATAGGGAATTCGATGATTTAGATTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACATCACCTTCCATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGCTTCTGGTCCTCAAAGCGACCCTGATGTGAATCAACAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCGATTCATGCAGTTGGCAGTACCAAGTCCTTAGAGGATGAGCTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGCTGGTGAACTCATACGTAGTTTGCCATGTTTGCATCAGGTTTATCTCATCTCCTTACCTTTCCTTTTGAACAAATGGTTGCAGTTATAA 756 42.86 MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDPDVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQVYLISLPFLLNKWLQL 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35743773 35747821 + Sed0003735.2 Sed11g2218 730864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2218 251 SUPERFAMILY RING/U-box 207 234 - -
Sed11g2218 251 MobiDBLite consensus disorder prediction 171 204 - -
Sed11g2218 251 PANTHER TARGET OF ERK KINASE MPK-1 2 235 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Sed11g2218 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 250 IPR013083 -
Sed11g2218 251 MobiDBLite consensus disorder prediction 177 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2218 K16283 - - csv:101216306 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0750 Sed-Chr3:4508525 Sed11g2218 Sed-Chr11:35743773 1.10E-117 dispersed
Sed11g2217 Sed-Chr11:35743773 Sed11g2218 Sed-Chr11:35743773 2.20E-126 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1846 . 86 573 C3H Transcription Factor Family AT2G31510 76.3 1.4e-229 793.1
Sed07g0043 . 72 559 C3H Transcription Factor Family AT2G31510 76.5 7.9e-228 787.3
Sed09g0427 . 72 524 C3H Transcription Factor Family AT2G31510 78.6 1.5e-223 773.1
Sed07g0043 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 2.0e-168 590.1
Sed09g0427 . 29 517 C3H Transcription Factor Family AT2G31770 57.2 1.0e-167 587.8
Sed03g1846 . 55 547 C3H Transcription Factor Family AT2G31770 55.8 3.0e-167 586.3
Sed03g1846 . 69 532 C3H Transcription Factor Family AT2G31760 57.6 4.8e-167 585.5
Sed07g0043 . 55 524 C3H Transcription Factor Family AT2G31760 57.8 1.8e-166 583.6
Sed09g0427 . 55 524 C3H Transcription Factor Family AT2G31760 56.6 1.1e-163 574.3
Sed01g4114 . 1 199 C3H Transcription Factor Family AT3G03550 52.1 4.6e-52 203.0
Sed05g0301 . 1 199 C3H Transcription Factor Family AT3G03550 52.6 1.5e-50 198.0
Sed03g0276 . 1 227 C3H Transcription Factor Family AT3G02290 60.3 4.5e-72 268.9
Sed11g2063 . 1 216 C3H Transcription Factor Family AT3G02290 59.4 5.6e-67 251.9
Sed12g2385 . 1 311 C3H Transcription Factor Family AT1G11020 73.9 1.3e-130 463.8
Sed12g2386 . 1 311 C3H Transcription Factor Family AT1G11020 73.9 1.3e-130 463.8
Sed01g1316 . 60 219 C3H Transcription Factor Family AT1G50440 73.8 3.7e-66 249.2
Sed01g1317 . 60 219 C3H Transcription Factor Family AT1G50440 73.8 3.7e-66 249.2
Sed01g1318 . 60 219 C3H Transcription Factor Family AT1G50440 73.8 3.7e-66 249.2
Sed06g0010 . 29 187 C3H Transcription Factor Family AT1G50440 51.5 1.4e-36 151.0
Sed03g3063 . 1 361 C3H Transcription Factor Family AT5G08750 61.2 4.8e-121 432.2
Sed03g3064 . 1 361 C3H Transcription Factor Family AT5G08750 61.2 4.8e-121 432.2
Sed03g3065 . 1 361 C3H Transcription Factor Family AT5G08750 61.2 4.8e-121 432.2
Sed13g0323 . 1 529 C3H Transcription Factor Family AT3G16090 64.3 4.7e-172 602.1
Sed07g1207 . 1 529 C3H Transcription Factor Family AT3G16090 60.6 2.9e-161 566.2
Sed07g1208 . 1 430 C3H Transcription Factor Family AT3G16090 69.7 4.1e-160 562.4
Sed07g2901 . 34 188 C3H Transcription Factor Family AT1G22510 67.7 2.3e-56 216.5
Sed07g2903 . 1 151 C3H Transcription Factor Family AT1G22510 67.5 3.7e-54 209.1
Sed03g0276 . 1 226 C3H Transcription Factor Family AT5G38895 55.9 5.1e-69 259.2
Sed11g2063 . 1 216 C3H Transcription Factor Family AT5G38895 55.3 6.9e-66 248.8
Sed10g1313 . 16 227 C3H Transcription Factor Family AT1G19310 65.9 6.3e-79 291.6
Sed11g1002 . 15 222 C3H Transcription Factor Family AT1G19310 62.3 1.0e-68 257.7
Sed10g0427 . 16 224 C3H Transcription Factor Family AT1G19310 60.0 3.2e-67 252.7
Sed07g2901 . 38 188 C3H Transcription Factor Family AT1G72175 68.9 1.4e-53 206.8
Sed07g2903 . 1 151 C3H Transcription Factor Family AT1G72175 68.9 1.4e-53 206.8
Sed14g1078 . 9 323 C3H Transcription Factor Family AT2G22120 83.0 2.9e-158 555.8
Sed10g0883 . 10 324 C3H Transcription Factor Family AT2G22120 83.0 6.4e-158 554.7
Sed10g0884 . 10 301 C3H Transcription Factor Family AT2G22120 78.2 2.9e-142 502.7
Sed03g2279 . 9 169 C3H Transcription Factor Family AT5G07040 60.4 1.6e-41 166.8
Sed12g2061 . 1 389 C3H Transcription Factor Family AT1G18470 75.6 2.5e-177 619.4
Sed08g0334 . 4 390 C3H Transcription Factor Family AT1G18470 74.9 3.7e-173 605.5
Sed11g1584 . 11 389 C3H Transcription Factor Family AT1G18470 63.0 2.9e-138 489.6
Sed11g1648 . 68 298 C3H Transcription Factor Family AT1G68200 51.3 2.6e-51 200.3
Sed07g0043 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 2.0e-168 590.1
Sed09g0427 . 29 517 C3H Transcription Factor Family AT2G31770 57.2 1.0e-167 587.8
Sed03g1846 . 55 547 C3H Transcription Factor Family AT2G31770 55.8 3.0e-167 586.3
Sed03g1846 . 69 532 C3H Transcription Factor Family AT2G31760 57.6 4.8e-167 585.5
Sed07g0043 . 55 524 C3H Transcription Factor Family AT2G31760 57.8 1.8e-166 583.6
Sed09g0427 . 55 524 C3H Transcription Factor Family AT2G31760 56.6 1.1e-163 574.3
Sed04g3632 . 39 270 C3H Transcription Factor Family AT5G55970 66.8 3.1e-92 336.3
Sed04g3630 . 31 292 C3H Transcription Factor Family AT5G55970 61.3 1.6e-91 334.0
Sed04g3631 . 31 292 C3H Transcription Factor Family AT5G55970 61.3 1.6e-91 334.0
Sed04g3629 . 31 290 C3H Transcription Factor Family AT5G55970 61.0 1.0e-90 331.3
Sed07g2751 . 46 276 C3H Transcription Factor Family AT5G55970 68.5 8.5e-90 328.2
Sed07g2752 . 46 276 C3H Transcription Factor Family AT5G55970 68.5 8.5e-90 328.2
Sed03g3063 . 1 361 C3H Transcription Factor Family AT5G63780 58.8 1.4e-115 414.1
Sed03g3064 . 1 361 C3H Transcription Factor Family AT5G63780 58.8 1.4e-115 414.1
Sed03g3065 . 1 361 C3H Transcription Factor Family AT5G63780 58.8 1.4e-115 414.1
Sed02g0370 . 1 426 C3H Transcription Factor Family AT3G58030 52.5 2.3e-106 383.6
Sed02g0371 . 1 426 C3H Transcription Factor Family AT3G58030 52.5 2.3e-106 383.6
Sed12g1275 . 1 418 C3H Transcription Factor Family AT3G58030 51.1 6.8e-98 355.5
Sed04g3632 . 41 337 C3H Transcription Factor Family AT4G26580 64.8 1.1e-111 401.0
Sed07g2751 . 48 344 C3H Transcription Factor Family AT4G26580 64.9 6.0e-110 395.2
Sed04g3629 . 45 336 C3H Transcription Factor Family AT4G26580 62.2 1.7e-109 393.7
Sed04g3630 . 45 344 C3H Transcription Factor Family AT4G26580 60.9 1.2e-107 387.5
Sed07g2752 . 48 276 C3H Transcription Factor Family AT4G26580 67.1 2.7e-86 316.6
Sed04g3631 . 45 283 C3H Transcription Factor Family AT4G26580 60.2 4.3e-84 309.3
Sed09g1382 . 1 243 C3H Transcription Factor Family AT3G63530 51.4 4.5e-62 235.7
Sed09g1381 . 1 243 C3H Transcription Factor Family AT3G63530 51.4 4.5e-62 235.7
Sed09g1384 . 1 243 C3H Transcription Factor Family AT3G63530 51.4 4.5e-62 235.7
Sed09g1383 . 7 192 C3H Transcription Factor Family AT3G63530 54.5 8.8e-50 194.9
Sed14g0547 . 1 467 C3H Transcription Factor Family AT5G01960 69.4 6.5e-170 594.7
Sed04g0314 . 27 463 C3H Transcription Factor Family AT5G01960 61.6 1.0e-151 534.3
Sed14g0548 . 1 398 C3H Transcription Factor Family AT5G01960 65.4 4.7e-128 455.7
Sed05g3047 . 1 143 C3H Transcription Factor Family AT2G04240 58.2 4.9e-41 165.2
Sed01g0593 . 1 148 C3H Transcription Factor Family AT2G04240 57.0 6.4e-41 164.9
Sed04g3747 . 1 154 C3H Transcription Factor Family AT2G04240 55.2 3.0e-38 156.0
Sed01g3255 . 11 235 C3H Transcription Factor Family AT5G19430 56.1 6.4e-64 241.9
Sed07g0934 . 128 584 C3H Transcription Factor Family AT5G45290 50.4 8.3e-101 365.5
Sed13g0745 . 131 577 C3H Transcription Factor Family AT5G45290 52.0 1.4e-100 364.8
Sed01g3255 . 13 235 C3H Transcription Factor Family AT5G12310 59.3 3.3e-60 229.6
Sed12g2152 . 70 372 C3H Transcription Factor Family AT5G05810 50.3 5.4e-73 272.7
Sed11g2183 . 54 215 C3H Transcription Factor Family AT5G05830 66.0 7.7e-60 228.0
Sed04g1211 . 70 232 C3H Transcription Factor Family AT5G05830 63.8 7.2e-58 221.5
Sed02g0773 . 74 227 C3H Transcription Factor Family AT5G05830 62.3 4.2e-50 195.7
Sed03g0408 . 13 161 C3H Transcription Factor Family AT5G05830 52.4 1.8e-40 163.7
Sed03g0276 . 1 227 C3H Transcription Factor Family AT5G15790 56.7 1.0e-71 267.7
Sed11g2063 . 1 216 C3H Transcription Factor Family AT5G15790 57.7 6.3e-66 248.4
Sed11g2217 . 1 264 C3H Transcription Factor Family AT3G55530 80.4 2.6e-111 399.4
Sed03g0750 . 1 272 C3H Transcription Factor Family AT3G55530 78.4 3.7e-110 395.6
Sed11g2218 . 1 237 C3H Transcription Factor Family AT3G55530 79.4 2.9e-94 342.8
Sed07g0394 . 1 273 C3H Transcription Factor Family AT1G63900 74.8 1.6e-116 416.8
Sed07g0395 . 1 273 C3H Transcription Factor Family AT1G63900 74.8 1.6e-116 416.8
Sed09g1162 . 1 273 C3H Transcription Factor Family AT1G63900 73.7 4.3e-114 408.7
Sed09g1163 . 21 251 C3H Transcription Factor Family AT1G63900 72.4 5.5e-93 338.6
Sed12g0308 . 10 393 C3H Transcription Factor Family AT2G44580 52.0 3.0e-113 406.4
Sed12g0309 . 10 393 C3H Transcription Factor Family AT2G44580 52.0 3.0e-113 406.4
Sed10g1313 . 25 150 C3H Transcription Factor Family AT1G74990 59.1 3.5e-40 162.2
Sed13g1935 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 2.7e-109 392.9
Sed13g0323 . 119 529 C3H Transcription Factor Family AT1G65040 56.4 2.5e-113 406.4
Sed07g1207 . 119 529 C3H Transcription Factor Family AT1G65040 52.4 7.0e-100 361.7
Sed07g1208 . 119 418 C3H Transcription Factor Family AT1G65040 65.0 2.7e-99 359.8
Sed10g0427 . 17 229 C3H Transcription Factor Family AT2G23780 61.6 8.0e-74 274.6
Sed10g1313 . 6 229 C3H Transcription Factor Family AT2G23780 54.8 2.3e-65 246.5
Sed11g1002 . 6 232 C3H Transcription Factor Family AT2G23780 51.7 9.5e-59 224.6
Sed03g2127 . 1 316 C3H Transcription Factor Family AT3G10810 56.4 2.4e-83 307.4
Sed03g2128 . 1 316 C3H Transcription Factor Family AT3G10810 56.4 2.4e-83 307.4
Sed12g1163 . 1 312 C3H Transcription Factor Family AT3G10810 51.7 1.9e-72 271.2
Sed12g1162 . 1 312 C3H Transcription Factor Family AT3G10810 51.7 1.9e-72 271.2
Sed02g0799 . 1 312 C3H Transcription Factor Family AT3G10810 51.3 6.2e-71 266.2
Sed01g3864 . 1 153 C3H Transcription Factor Family AT1G63840 57.7 4.1e-43 172.2
Sed09g0036 . 1 149 C3H Transcription Factor Family AT1G63840 52.9 1.9e-40 163.3
Sed11g1692 . 9 342 C3H Transcription Factor Family AT1G68070 63.3 1.2e-116 417.5
Sed01g2406 . 1 162 C3H Transcription Factor Family AT1G76410 58.2 8.0e-48 188.0
Sed04g1046 . 1 152 C3H Transcription Factor Family AT1G76410 54.3 4.6e-43 172.2
Sed01g1330 . 1 409 C3H Transcription Factor Family AT1G80400 54.1 6.6e-111 398.7
Sed01g1331 . 1 409 C3H Transcription Factor Family AT1G80400 54.1 6.6e-111 398.7
Sed01g1328 . 1 409 C3H Transcription Factor Family AT1G80400 54.1 6.6e-111 398.7
Sed01g1329 . 1 409 C3H Transcription Factor Family AT1G80400 54.1 6.6e-111 398.7
Sed03g1568 . 1 407 C3H Transcription Factor Family AT1G80400 54.9 9.5e-110 394.8
Sed03g1569 . 1 407 C3H Transcription Factor Family AT1G80400 54.9 9.5e-110 394.8
Sed04g1046 . 1 146 C3H Transcription Factor Family AT2G17450 54.6 1.4e-36 150.6
Sed03g1846 . 86 573 C3H Transcription Factor Family AT2G31510 76.3 1.4e-229 793.1
Sed07g0043 . 72 559 C3H Transcription Factor Family AT2G31510 76.5 7.9e-228 787.3
Sed09g0427 . 72 524 C3H Transcription Factor Family AT2G31510 78.6 1.5e-223 773.1
Sed14g0265 . 7 161 C3H Transcription Factor Family AT2G35910 56.4 9.7e-45 177.9
Sed14g0199 . 1 307 C3H Transcription Factor Family AT2G41980 81.4 4.4e-152 535.0
Sed14g0200 . 1 307 C3H Transcription Factor Family AT2G41980 81.4 4.4e-152 535.0
Sed03g2288 . 1 307 C3H Transcription Factor Family AT2G41980 80.1 1.6e-149 526.6
Sed07g0856 . 65 322 C3H Transcription Factor Family AT2G41980 80.6 3.4e-128 455.7
Sed13g0065 . 43 320 C3H Transcription Factor Family AT2G41980 75.9 7.6e-128 454.5
Sed01g3349 . 27 323 C3H Transcription Factor Family AT2G41980 71.3 1.4e-126 450.3
Sed01g3350 . 27 323 C3H Transcription Factor Family AT2G41980 71.3 1.4e-126 450.3
Sed07g2300 . 73 347 C3H Transcription Factor Family AT2G41980 76.2 4.1e-126 448.7
Sed07g2301 . 31 305 C3H Transcription Factor Family AT2G41980 76.2 4.1e-126 448.7
Sed07g2302 . 40 314 C3H Transcription Factor Family AT2G41980 76.2 4.1e-126 448.7
Sed03g0993 . 48 305 C3H Transcription Factor Family AT2G41980 79.5 5.4e-126 448.4
Sed11g1561 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 2.7e-125 446.0
Sed11g1562 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 2.7e-125 446.0
Sed11g1563 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 2.7e-125 446.0
Sed04g2640 . 48 304 C3H Transcription Factor Family AT2G41980 79.8 3.5e-125 445.7
Sed07g0857 . 65 342 C3H Transcription Factor Family AT2G41980 74.8 1.3e-124 443.7
Sed05g1084 . 17 313 C3H Transcription Factor Family AT2G41980 69.6 1.1e-123 440.7
Sed05g1085 . 17 313 C3H Transcription Factor Family AT2G41980 69.6 1.1e-123 440.7
Sed09g0524 . 5 301 C3H Transcription Factor Family AT2G41980 68.7 1.6e-122 436.8
Sed01g3351 . 3 236 C3H Transcription Factor Family AT2G41980 80.8 1.1e-115 414.1
Sed05g1087 . 3 236 C3H Transcription Factor Family AT2G41980 78.6 1.2e-112 404.1
Sed09g0525 . 39 279 C3H Transcription Factor Family AT2G41980 73.4 1.4e-110 397.1
Sed05g1086 . 17 214 C3H Transcription Factor Family AT2G41980 65.0 5.3e-73 272.3
Sed05g1088 . 17 214 C3H Transcription Factor Family AT2G41980 65.0 5.3e-73 272.3
Sed03g0994 . 48 200 C3H Transcription Factor Family AT2G41980 79.7 4.5e-72 269.2
Sed03g0995 . 48 200 C3H Transcription Factor Family AT2G41980 79.7 4.5e-72 269.2
Sed03g0996 . 48 200 C3H Transcription Factor Family AT2G41980 79.7 4.5e-72 269.2
Sed03g0997 . 48 200 C3H Transcription Factor Family AT2G41980 79.7 4.5e-72 269.2
Sed02g1274 . 108 384 C3H Transcription Factor Family AT3G06140 62.7 2.2e-94 343.6
Sed04g1357 . 106 355 C3H Transcription Factor Family AT3G06140 50.4 3.9e-67 253.1
Sed04g1357 . 32 317 C3H Transcription Factor Family AT3G09770 61.5 1.0e-88 324.7
Sed02g0658 . 30 333 C3H Transcription Factor Family AT3G09770 59.8 1.5e-87 320.9
Sed09g0025 . 1 296 C3H Transcription Factor Family AT4G01270 55.1 7.0e-78 289.3
Sed06g0407 . 134 697 C3H Transcription Factor Family AT3G26730 53.3 5.6e-161 565.8
Sed12g1877 . 58 354 C3H Transcription Factor Family AT3G47990 70.2 1.0e-121 434.1
Sed12g1878 . 58 354 C3H Transcription Factor Family AT3G47990 70.2 1.0e-121 434.1
Sed12g1879 . 58 354 C3H Transcription Factor Family AT3G47990 70.2 1.0e-121 434.1
Sed12g1880 . 58 354 C3H Transcription Factor Family AT3G47990 70.2 1.0e-121 434.1
Sed08g0132 . 58 334 C3H Transcription Factor Family AT3G47990 72.9 1.2e-120 430.6
Sed01g1661 . 58 343 C3H Transcription Factor Family AT3G47990 70.8 5.4e-118 421.8
Sed01g1662 . 52 337 C3H Transcription Factor Family AT3G47990 70.8 5.4e-118 421.8
Sed01g2406 . 5 188 C3H Transcription Factor Family AT1G20823 55.4 4.2e-47 185.7
Sed04g1046 . 11 152 C3H Transcription Factor Family AT1G20823 58.0 2.8e-43 172.9
Sed05g3641 . 23 388 C3H Transcription Factor Family AT3G18930 52.6 2.7e-80 297.0
Sed04g0986 . 20 235 C3H Transcription Factor Family AT5G66070 72.7 3.2e-75 279.3
Sed04g1211 . 10 232 C3H Transcription Factor Family AT2G37950 50.4 1.4e-45 180.6
Sed02g0715 . 3 270 C3H Transcription Factor Family AT5G02750 54.5 4.8e-68 255.8
Sed12g2061 . 5 467 C3H Transcription Factor Family AT1G73950 72.1 2.7e-195 679.1
Sed08g0334 . 5 468 C3H Transcription Factor Family AT1G73950 71.6 1.1e-191 667.2
Sed11g1584 . 12 467 C3H Transcription Factor Family AT1G73950 59.3 1.5e-153 540.4
Sed11g1692 . 2 242 C3H Transcription Factor Family AT2G01735 59.4 1.4e-74 277.3
Sed07g1933 . 61 269 C3H Transcription Factor Family AT2G01735 54.2 1.5e-52 204.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006363 1 5 1 1 1 1 2 1 0 1 0 1 2 1 1 1 1 2 2 0 1 1 1 1 1 1 1 3 1 2 38