Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2264 ATGGGAGCTTTTTGGAGGGATTTGGTTTTGTGTGTGATATTTCTGGCGGCTACGGTAGAGAGAAGAGAGGCTCAATTAGTGGAGAATTTCTACGCCTCCAGCTGCCCAAACGTGGAGCAAATTGTTACTCAGGCTGTTCAAAACAAGTTTAATCAGACCTTCGTCACCGTCCCTGCAACTTTAAGGCTCTTCTTCCACGATTGCTTTGTTGAGGGATGTGATGGTTCGGTGTTGATAGCATCACCAAATGGAGATGCTGAGAAAGATGCAAAAGACAACCTTTCATTAGCCGGAGATGGGTTTGACACGGTTATTAAAGCCAAAGAAGCAGTTGAAAGTGTTTGCCCTGGAGTCGTCTCTTGTGCTGATATCTTGGCTCTTGCAGCTAGGGATGTCATTGTCTTGGTAGGTGGGCCACAATACAGCGTGGAACTAGGGCGTCGAGACGGTCTAATTTCTCGAGCATCCCGAGTGGCCGGAAACCTGCCCGAACCGTCCTTCAACCTAACCCAGCTGGTGAGCATGTTCGGAAGCCACAGCCTGAGCCTGGCCGACATGATCGCCCTCTCCGGGGCCCACACCGTAGGCTTCTCCCACTGCGACCGCTTCGCCAACCGCCTCTACTCCTTCTCCCCTTCCTCCCCGGTCGACCCGTCCTTGGAACCGGGTTACGCCCGACAACTCATGGACGCGTGCCCACAGAACGTGGACCCCTCCATCGCCATCAACATGGATCCTATCACCCCTCAAGCCTTCGACAACGTTTACTACCAGAACCTCGTCGCCGGCAAGGGCCTCTTCACCGCCGACCAGATTCTGTTCGAGGACTCGGATTCGCAGCCCACGGTGCTCAGCTTTGCCAACAGTGGGGCGGAGTTCAATGCCGCGTTTATCGCGGCAATCACGAAGATGGGTCGGGTTGGGGTTAAGATTGGGAACGATGGTGAAATTCGAACCGATTGCTCTGCTTTTAATTCTTGA 981 53.41 MGAFWRDLVLCVIFLAATVERREAQLVENFYASSCPNVEQIVTQAVQNKFNQTFVTVPATLRLFFHDCFVEGCDGSVLIASPNGDAEKDAKDNLSLAGDGFDTVIKAKEAVESVCPGVVSCADILALAARDVIVLVGGPQYSVELGRRDGLISRASRVAGNLPEPSFNLTQLVSMFGSHSLSLADMIALSGAHTVGFSHCDRFANRLYSFSPSSPVDPSLEPGYARQLMDACPQNVDPSIAINMDPITPQAFDNVYYQNLVAGKGLFTADQILFEDSDSQPTVLSFANSGAEFNAAFIAAITKMGRVGVKIGNDGEIRTDCSAFNS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35900894 35902938 + Sed0005121.1 Sed11g2264 730910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2264 326 PANTHER - 10 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 SUPERFAMILY Heme-dependent peroxidases 25 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Sed11g2264 326 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 FunFam Peroxidase 29 171 - -
Sed11g2264 326 Pfam Peroxidase 42 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Sed11g2264 326 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed11g2264 326 Gene3D - 29 325 - -
Sed11g2264 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed11g2264 326 FunFam Peroxidase 163 304 - -
Sed11g2264 326 Gene3D Peroxidase, domain 2 163 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2140 Sed-Chr1:16054982 Sed11g2264 Sed-Chr11:35900894 3.40E-55 dispersed
Sed10g0702 Sed-Chr10:4909231 Sed11g2264 Sed-Chr11:35900894 2.40E-111 dispersed
Sed11g2264 Sed-Chr11:35900894 Sed14g0905 Sed-Chr14:17988303 3.10E-111 dispersed
Sed11g2264 Sed-Chr11:35900894 Sed05g3431 Sed-Chr5:43258200 8.10E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2264 K00430 - csv:101213580 538.495