Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2271 ATGGTTCTACTAGAGGTTTGCTTTGTTCTCATTGTGAGCAACCATTTTTCATTTGTGTCTCCTCTTAATGAGGAGGGATTGGCTCTTCTTTCCTTCAAAAACTCCACTTTCGATGCTGAAAGCTTTCTCCGAAACTGGAACCCTTTTGATGCGACCCCGTGTTCGTGGAACGGAATCAATTGCACAGAACAAAGAGTTGTCTCTCTTAGTATAGCAGGCAAGAAACTCTCTGGTACTCTTCATCCCGCACTTGGGAAACTTGCGTCACTACGCCGTTTAAGCCTTCGAAACAATGCCCTTTATGGAAGCTTCCCCGTTGAGCTCTATAACTTGGTAGAGTTACAAAGCTTAGACCTCTCACAAAATGCCTTCAATGGTTCTATTCCAGATGGATTTGGTTCCCACTTGAAATCTCTTCAGAATCTCAATCTTTCTTTCAATGCAATCCGCGGTTCGATCCCTTTGGACTTTGGCAACTTGACCAACTTGCAAGGGACTCTCGATTTGTCTCACAATGTCTTAACCGGACCAATCCCGCTGAGCCTAAGCAGCCTACCTGCAAACCTTTATATTGATCTCAGTTACAATAATCTCAGTGGCTCAATACCACCCCAAGAAGCTTACCAGAACCTTGGACCTACGGCTTATATAGGCAATACTTTTCTATGTGGACTTCCTCTAAATGTTTCATGTCCATCCATGGTGCGAACGCCGAACCCCGACTCATGGTTCCATTGCCCATCACATGGGAAAGGTGGAAAATCTTGCTCCATAATCACAGCTTCTGCAAGTATCATAGTTGGTTTCTGCCTGGTTATCATGGTAGCTTTTTGGTGCAAGAGAGCTTATCCTCCTAAAGGGAATGAAATTTCAGATGGCTGTAACTTCAGAGAGGCATTGATGTTTAAAACAGATTTTTCTTGCTTTGCAAAATATGAGGTAGAACAGCTACCAGAAAACATGGAGAAGTACAACTTTGTGCTACTGGATCGGCAAGCCGACTTCGACCTTGAGCAACTTTTGAAAGCCTCAGCTTATCTCCTGGGCAAGAATGGGAATGGGATTGTGTATAAAGTGGTTCTAGAGAAAGGACTCAAGCTAGCAGTTAGAAGATTGGAAGATGGAGCTTATGAAAGGTTTAAAGAGTTTCAGACTGAAGTTGAAGCAATTGGGAAAATCAGGCACCCCAATATTGTTGCTCTTTTAGCTTATTGCTGGTCTGTTGAAGAGAAGCTGCTCATCTATGAATACATACCACATGGTGACCTGGCAACTGCAATTCATGGAAAAGCAGAAATTCCGTACATGAGAGCACTTGGTTGGGCAGATAGAGTGAAAATCATGAAAGGAATAGCAAAAGGATTAACGTACCTTCACGAATTGAGTCCAAGAAAATACATCCACGGCGATTTGAAGCCCTCCAACATTCTCCTCGGAAACAAAATGGAGCCCTACATCTCAGATTTCGGACTCACCCGACTAACAGCTAACCCCGCCGGAGACCTAACCCCCGCCGCAACGCCGCGGCAGCACAGCTCTCCATTCCGATCAAACTCCTCTTTGTCGATAGGTTCGTATTATGAGGCACCGGAATCCTTGAAGGCGGCAAAGCCATCGCAGAAGTGGGATGTGTACTCATTCGGCGTCATATTACTGGAAATCATCACCGGAAAGTCGGAGACGGAGCTGGTTGAATGGATTCAACTTGGGATGGATGAGGGGAGGCGGCCGCCGTGTGTTGTAGATCCGTTGATGGGTGAGGAAGTGGATGAGGAAGAAGCGGCGGCGGCCATTGAAATAGCCGTTGCTTGTACTCAGAGGGTCCCTGAGAAGAGACCTTGTATCAGAATTGTCTCTGAATGTTTGGATAAAATCCCAACTTCTTCTTCCTAA 1893 45.38 MVLLEVCFVLIVSNHFSFVSPLNEEGLALLSFKNSTFDAESFLRNWNPFDATPCSWNGINCTEQRVVSLSIAGKKLSGTLHPALGKLASLRRLSLRNNALYGSFPVELYNLVELQSLDLSQNAFNGSIPDGFGSHLKSLQNLNLSFNAIRGSIPLDFGNLTNLQGTLDLSHNVLTGPIPLSLSSLPANLYIDLSYNNLSGSIPPQEAYQNLGPTAYIGNTFLCGLPLNVSCPSMVRTPNPDSWFHCPSHGKGGKSCSIITASASIIVGFCLVIMVAFWCKRAYPPKGNEISDGCNFREALMFKTDFSCFAKYEVEQLPENMEKYNFVLLDRQADFDLEQLLKASAYLLGKNGNGIVYKVVLEKGLKLAVRRLEDGAYERFKEFQTEVEAIGKIRHPNIVALLAYCWSVEEKLLIYEYIPHGDLATAIHGKAEIPYMRALGWADRVKIMKGIAKGLTYLHELSPRKYIHGDLKPSNILLGNKMEPYISDFGLTRLTANPAGDLTPAATPRQHSSPFRSNSSLSIGSYYEAPESLKAAKPSQKWDVYSFGVILLEIITGKSETELVEWIQLGMDEGRRPPCVVDPLMGEEVDEEEAAAAIEIAVACTQRVPEKRPCIRIVSECLDKIPTSSS 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35937671 35940191 + Sed0015198.1 Sed11g2271 730917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2271 630 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Sed11g2271 630 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Sed11g2271 630 SMART serkin_6 342 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2271 630 SUPERFAMILY Protein kinase-like (PK-like) 347 620 IPR011009 -
Sed11g2271 630 Gene3D Phosphorylase Kinase; domain 1 310 417 - -
Sed11g2271 630 SUPERFAMILY L domain-like 24 227 - -
Sed11g2271 630 ProSiteProfiles Protein kinase domain profile. 342 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed11g2271 630 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Sed11g2271 630 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
Sed11g2271 630 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515(InterPro)
Sed11g2271 630 Gene3D Transferase(Phosphotransferase) domain 1 418 630 - -
Sed11g2271 630 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 130 IPR050647 -
Sed11g2271 630 Pfam Protein tyrosine and serine/threonine kinase 348 568 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2271 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed11g2271 630 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 22 166 - -
Sed11g2271 630 FunFam Os07g0541700 protein 425 505 - -
Sed11g2271 630 Gene3D Ribonuclease Inhibitor 135 233 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2112 Sed-Chr7:36643734 Sed11g2271 Sed-Chr11:35937671 6.10E-112 dispersed
Sed11g2271 Sed-Chr11:35937671 Sed13g0474 Sed-Chr13:3219977 2.10E-68 dispersed
Sed11g2271 Sed-Chr11:35937671 Sed11g1647 Sed-Chr11:31758718 5.70E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79949 PF00069 Pkinase 3.10E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2271 - - - 0.0