Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2297 ATGCTTTTTTTTTCTTCAAAATTGATCATGTTCGATTTAAAAAAAAATATGATAAGTTATAGCACAAAAGTCACGCGCAGCGTCAATATGGAAAACCTGAGGAGTGGGTATTTGTTCCCTGAGATATCTATGCGAGAATATGCGCATGCTCAAAAGTACCCAAATATGAAGATAATCAAACTTGGAATAGGTGACACTACAGAGCCTATACCAGAATGTATTGCATCAGCTATGGCACAACAAGCAATGGCTCTGTCAACGGTTGAAGGCTACAGTGGGTATGGGGATGAGCAAGGCAACATGGCACTGAGAAAAAGAATTGCAGAAAAGTTTTACAGAAACGTGGGCATAAAAGGAGAAGAAGTATTTGTCTCCGATGGAGCTCAATGTGACATCTCTCGCCTTCAGATGCTTCTGGGATCAAACGTCACGGTGGCTGTGCAGGACCCTTCTTTCCCGGCATACATAGATTCAAGCGTTATTTTCGGAAGAGCAGGAAGCCTAGGAGGGCAGAACGGTAAATACGAAAAAATCGTATACATGAAGTGTGGGCCCGAGAACGATTTTTTCCCAGATTTATCAAACACTCCCAGAACTGATATTATCTTCTTCTGCTCTCCAAACAATCCCACCGGAACCGCTGCCAGTGCCGCCCAACTCCGGCGCCTCGTCGAGTTCGCCACCGCCAATGGGTCCATCATCGTGTTCGATTCCTCCTACGCCGCGTACATCTCCGACGACAGCCCCAGCTCCATCTACCAAATCCCGGGAGCCAAACAGGTCGCAATTGAAATATCATCCTTCTCGAAGTTCGCAGGGTTCACCGGCGTCCGCCTCGGCTGGACGGTGGTTCCGGAGGAGCTATCGTACGCGAACGGATTTCCGATGATAAAGGATTACGATCGAATCGTACGCACCTGCTTCAATGGCGCCTCGAACATCGTTCAAGCCGGTGGTCTGGCGTGCCTCTCCGCAGAAGGTTTCCAGGCGGTGAGCCGATCGGTGAATTACTACAAGGAGAACGCCAGGATTGTGGCGGAGTCGTTTCGAGGGCTGGGAATGGAGGTGTACGGAGGCCAAAACGCACCGTATGTGTGGGTGCATTTTCCAGGATCAAGCTCTTGGGAGATATTTGCAGAGATTTTGGAGAAGACGCACATCGTCACCATTCCGGGGAGGGGATTCGGGCCCGGCGGCGAGGCCTACATAAGAGTCAGTGCGTTTGGCCCCAGGGAAACCATTTTAGAAGCTTCTCAGCGCCTCTCAACTCTCACCAAAATCATCTTCAATTAG 1293 49.5 MLFFSSKLIMFDLKKNMISYSTKVTRSVNMENLRSGYLFPEISMREYAHAQKYPNMKIIKLGIGDTTEPIPECIASAMAQQAMALSTVEGYSGYGDEQGNMALRKRIAEKFYRNVGIKGEEVFVSDGAQCDISRLQMLLGSNVTVAVQDPSFPAYIDSSVIFGRAGSLGGQNGKYEKIVYMKCGPENDFFPDLSNTPRTDIIFFCSPNNPTGTAASAAQLRRLVEFATANGSIIVFDSSYAAYISDDSPSSIYQIPGAKQVAIEISSFSKFAGFTGVRLGWTVVPEELSYANGFPMIKDYDRIVRTCFNGASNIVQAGGLACLSAEGFQAVSRSVNYYKENARIVAESFRGLGMEVYGGQNAPYVWVHFPGSSSWEIFAEILEKTHIVTIPGRGFGPGGEAYIRVSAFGPRETILEASQRLSTLTKIIFN 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36057275 36066645 - Sed0017864.1 Sed11g2297 730943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2297 430 Pfam Aminotransferase class I and II 57 421 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Sed11g2297 430 FunFam LL-diaminopimelate aminotransferase, chloroplastic 68 325 - -
Sed11g2297 430 Gene3D - 68 325 IPR015421 -
Sed11g2297 430 NCBIfam LL-diaminopimelate aminotransferase 25 423 IPR019942 GO:0008483(InterPro)
Sed11g2297 430 Gene3D Aspartate Aminotransferase, domain 1 38 421 IPR015422 -
Sed11g2297 430 SUPERFAMILY PLP-dependent transferases 36 421 IPR015424 -
Sed11g2297 430 PANTHER AMINOTRANSFERASE 14 424 IPR019942 GO:0008483(InterPro)|GO:0009507(PANTHER)|GO:0009862(PANTHER)|GO:0062034(PANTHER)|GO:0062045(PANTHER)
Sed11g2297 430 CDD AAT_like 59 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2297 K10206 - - csv:101216470 693.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1158 Sed-Chr7:8675461 Sed11g2297 Sed-Chr11:36057275 3.30E-159 dispersed
Sed11g2297 Sed-Chr11:36057275 Sed13g0404 Sed-Chr13:2661161 3.60E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g354 . . . . . . . . . . . . . . Sed11g2297 . . Bhi04g02497 Tan11g0087 Cmetu03g1388 . Hepe02g3438 . Lcy10g2329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00761 Cam11g0795 Cec11g0776 Cco11g0782 Clacu11g1063 Cmu11g0922 Cre11g1239 . . Chy03g00068 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010966 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31