Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2299 ATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCATCTATGAGCCATTTCACCACATCAACTCTTGGGGAACTTCCTTCGGTACTCGGCTAGATACAGCCATATCTTCTACTATAAAACTGGACGACTGTGCACACACTAACCCCGAGTTTAATCCTTTTGAATCGATGGATCATCTCGAGAGCAGCCAAGAAATGAACAAACCAATCTACGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGCTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGCTGTATACACGAGCTGCTTAGTAGATACCAGCCACTTGGGATTTGGTGGATTGGTGAGCCCAGGGATTGCTGAGTTTGAAGTGGAATACAATCACTGGGTTGAAGTGCAAGAGAGGCAGGTCACCGAGCTCAGAAACGCGGTGCAAGTTCCTATAACCGATATCGAACTGCAAATGTTAGTGGAGCGCGTCTTAAACCATTACCACAGCCTGTTTTCCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCTGAGCGGTTTTTCCTCTGGATTGGAGGATTTCGCCCATCAGAGTTGCTAAATGTTCTCAAGTCATGCTTCGAGCCATTAAACGAACAACAAAGAGTCGATATCCACAATTTGCAACAATCTTCTCGGCAAGCTGAAGATGCTCTCTCACAGGGAATGGATAAATTGCACCTAAATCTATCCCTTTGCATTGCCAATAATCCTCTAGGAAGCTATATTTCTCAGATGAGTGATGGGATGGAGAGACTAGAAGCATTGGAAAACTTTGTAAGCCAGGCTGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATCCTAACCACCAAACAAGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGTCTCCGTGTTCTCAGTTCCCTCTGGACCACTCGACCTCGTGAGCATGCCTAG 1077 45.5 MSSSSTQLYASRMGIIYEPFHHINSWGTSFGTRLDTAISSTIKLDDCAHTNPEFNPFESMDHLESSQEMNKPIYDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKAVYTSCLVDTSHLGFGGLVSPGIAEFEVEYNHWVEVQERQVTELRNAVQVPITDIELQMLVERVLNHYHSLFSMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKSCFEPLNEQQRVDIHNLQQSSRQAEDALSQGMDKLHLNLSLCIANNPLGSYISQMSDGMERLEALENFVSQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWTTRPREHA 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36090263 36096549 + Sed0016927.1 Sed11g2299 730945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2299 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2299 358 Coils Coil 95 122 - -
Sed11g2299 358 FunFam BZIP family transcription factor 75 124 - -
Sed11g2299 358 Gene3D - 75 129 - -
Sed11g2299 358 PANTHER TRANSCRIPTION FACTOR TGA9 1 357 - -
Sed11g2299 358 Pfam bZIP transcription factor 76 114 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2299 358 SUPERFAMILY Leucine zipper domain 76 117 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2299 358 Pfam Seed dormancy control 162 237 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g2299 358 SMART brlzneu 70 132 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2299 358 Coils Coil 244 264 - -
Sed11g2299 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 74 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2299 358 ProSiteProfiles DOG1 domain profile. 145 353 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0670 Sed-Chr3:4046145 Sed11g2299 Sed-Chr11:36090263 3.30E-152 dispersed
Sed05g2514 Sed-Chr5:37222221 Sed11g2299 Sed-Chr11:36090263 1.50E-11 dispersed
Sed11g2299 Sed-Chr11:36090263 Sed11g2304 Sed-Chr11:36090263 8.40E-203 dispersed
Sed11g2299 Sed-Chr11:36090263 Sed11g2300 Sed-Chr11:36090263 4.50E-156 tandem
Sed11g2299 Sed-Chr11:36090263 Sed03g0665 Sed-Chr3:4044539 1.20E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40059 PF14144 DOG1 2.20E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2299 K14431 - csv:101217648 567.385