Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g2300 | ATGAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGCTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGCTGTATACACGAGCTGCTTAGTAGATACCAGCCACTTGGGATTTGGTGGATTGGTGAGCCCAGGGATTGCTGAGTTTGAAGTGGAATACAATCACTGGGTTGAAGTGCAAGAGAGGCAGGTCACCGAGCTCAGAAACGCGGTGCAAGTTCCTATAACCGATATCGAACTGCAAATGTTAGTGGAGCGCGTCTTAAACCATTACCACAGCCTGTTTTCCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCTGAGCGGTTTTTCCTCTGGATTGGAGGATTTCGCCCATCAGAGTTGCTAAATGTTCTCAAGTCATGCTTCGAGCCATTAAACGAACAACAAAGAGTCGATATCCACAATTTGCAACAATCTTCTCGGCAAGCTGAAGATGCTCTCTCACAGGGAATGGATAAATTGCACCTAAATCTATCCCTTTGCATTGCCAATAATCCTCTAGGAAGCTATATTTCTCAGATGAGTGATGGGATGGAGAGACTAGAAGCATTGGAAAACTTTGTAAGCCAGGCTGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATCCTAACCACCAAACAAGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGTCTCCGTGTTCTCAGTTCCCTCTGGACCACTCGACCTCGTGAGCATGCCTAG | 855 | 45.96 | MKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKAVYTSCLVDTSHLGFGGLVSPGIAEFEVEYNHWVEVQERQVTELRNAVQVPITDIELQMLVERVLNHYHSLFSMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKSCFEPLNEQQRVDIHNLQQSSRQAEDALSQGMDKLHLNLSLCIANNPLGSYISQMSDGMERLEALENFVSQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWTTRPREHA | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36090263 | 36096549 | + | Sed0016927.2 | Sed11g2300 | 730946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g2300 | 284 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 2 | 283 | - | - | |
Sed11g2300 | 284 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 5 | 20 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2300 | 284 | SUPERFAMILY | Leucine zipper domain | 2 | 43 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2300 | 284 | Coils | Coil | 21 | 48 | - | - | |
Sed11g2300 | 284 | FunFam | BZIP family transcription factor | 1 | 50 | - | - | |
Sed11g2300 | 284 | Pfam | Seed dormancy control | 88 | 163 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed11g2300 | 284 | Pfam | bZIP transcription factor | 2 | 41 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2300 | 284 | Coils | Coil | 170 | 190 | - | - | |
Sed11g2300 | 284 | Gene3D | - | 1 | 55 | - | - | |
Sed11g2300 | 284 | ProSiteProfiles | DOG1 domain profile. | 71 | 279 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed11g2300 | 284 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 1 | 44 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g2300 | Sed-Chr11:36090263 | Sed11g2304 | Sed-Chr11:36090263 | 1.00E-155 | dispersed | |
Sed11g2299 | Sed-Chr11:36090263 | Sed11g2300 | Sed-Chr11:36090263 | 4.50E-156 | tandem | |
Sed11g2300 | Sed-Chr11:36090263 | Sed11g2301 | Sed-Chr11:36090263 | 8.60E-126 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40060 | PF14144 | DOG1 | 1.40E-29 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g2300 | K14431 | - | csv:101217648 | 454.521 |