Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2300 ATGAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGCTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGCTGTATACACGAGCTGCTTAGTAGATACCAGCCACTTGGGATTTGGTGGATTGGTGAGCCCAGGGATTGCTGAGTTTGAAGTGGAATACAATCACTGGGTTGAAGTGCAAGAGAGGCAGGTCACCGAGCTCAGAAACGCGGTGCAAGTTCCTATAACCGATATCGAACTGCAAATGTTAGTGGAGCGCGTCTTAAACCATTACCACAGCCTGTTTTCCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCTGAGCGGTTTTTCCTCTGGATTGGAGGATTTCGCCCATCAGAGTTGCTAAATGTTCTCAAGTCATGCTTCGAGCCATTAAACGAACAACAAAGAGTCGATATCCACAATTTGCAACAATCTTCTCGGCAAGCTGAAGATGCTCTCTCACAGGGAATGGATAAATTGCACCTAAATCTATCCCTTTGCATTGCCAATAATCCTCTAGGAAGCTATATTTCTCAGATGAGTGATGGGATGGAGAGACTAGAAGCATTGGAAAACTTTGTAAGCCAGGCTGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATCCTAACCACCAAACAAGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGTCTCCGTGTTCTCAGTTCCCTCTGGACCACTCGACCTCGTGAGCATGCCTAG 855 45.96 MKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKAVYTSCLVDTSHLGFGGLVSPGIAEFEVEYNHWVEVQERQVTELRNAVQVPITDIELQMLVERVLNHYHSLFSMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKSCFEPLNEQQRVDIHNLQQSSRQAEDALSQGMDKLHLNLSLCIANNPLGSYISQMSDGMERLEALENFVSQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWTTRPREHA 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36090263 36096549 + Sed0016927.2 Sed11g2300 730946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2300 284 PANTHER TRANSCRIPTION FACTOR TGA9 2 283 - -
Sed11g2300 284 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 5 20 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2300 284 SUPERFAMILY Leucine zipper domain 2 43 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2300 284 Coils Coil 21 48 - -
Sed11g2300 284 FunFam BZIP family transcription factor 1 50 - -
Sed11g2300 284 Pfam Seed dormancy control 88 163 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g2300 284 Pfam bZIP transcription factor 2 41 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2300 284 Coils Coil 170 190 - -
Sed11g2300 284 Gene3D - 1 55 - -
Sed11g2300 284 ProSiteProfiles DOG1 domain profile. 71 279 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g2300 284 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 44 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2300 Sed-Chr11:36090263 Sed11g2304 Sed-Chr11:36090263 1.00E-155 dispersed
Sed11g2299 Sed-Chr11:36090263 Sed11g2300 Sed-Chr11:36090263 4.50E-156 tandem
Sed11g2300 Sed-Chr11:36090263 Sed11g2301 Sed-Chr11:36090263 8.60E-126 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40060 PF14144 DOG1 1.40E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2300 K14431 - csv:101217648 454.521