Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed11g2301 | ATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCATCTATGAGCCATTTCACCACATCAACTCTTGGGGAACTTCCTTCGGTACTCGGCTAGATACAGCCATATCTTCTACTATAAAACTGGACGACTGTGCACACACTAACCCCGAGTTTAATCCTTTTGAATCGATGGATCATCTCGAGAGCAGCCAAGAAATGAACAAACCAATCTACGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGCTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGCTGTATACACGAGCTGCTTAGTAGATACCAGCCACTTGGGATTTGGTGGATTGGTGAGCCCAGGGATTGCTGAGTTTGAAGTGGAATACAATCACTGGGTTGAAGTGCAAGAGAGGCAGGTCACCGAGCTCAGAAACGCGGTGCAAGTTCCTATAACCGATATCGAACTGCAAATGTTAGTGGAGCGCGTCTTAAACCATTACCACAGCCTGTTTTCCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCTGAGCGGTTTTTCCTCTGGATTGGAGGATTTCGCCCATCAGAGTTGCTAAATGTTCTCAAGTCATGCTTCGAGCCATTAAACGAACAACAAAGAGTCGATATCCACAATTTGCAACAATCTTCTCGGCAAGCTGAAGATGCTCTCTCACAGGGAATGGATAAATTGCACCTAAATCTATCCCTTTGCATTGCCAATAATCCTCTAGGAAGCTATATTTCTCAGATGAGTGATGGGATGGAGAGACTAGAAGCATTGGAAAACTTTGTAAGCCAGGTAATGTGCTGCATTTTCTTTCACAATAAATGGAGTTGA | 963 | 44.03 | MSSSSTQLYASRMGIIYEPFHHINSWGTSFGTRLDTAISSTIKLDDCAHTNPEFNPFESMDHLESSQEMNKPIYDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKAVYTSCLVDTSHLGFGGLVSPGIAEFEVEYNHWVEVQERQVTELRNAVQVPITDIELQMLVERVLNHYHSLFSMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKSCFEPLNEQQRVDIHNLQQSSRQAEDALSQGMDKLHLNLSLCIANNPLGSYISQMSDGMERLEALENFVSQVMCCIFFHNKWS | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36090263 | 36092615 | + | Sed0016927.3 | Sed11g2301 | 730947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed11g2301 | 320 | Pfam | Seed dormancy control | 162 | 237 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed11g2301 | 320 | Gene3D | - | 75 | 129 | - | - | |
Sed11g2301 | 320 | Pfam | bZIP transcription factor | 76 | 114 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2301 | 320 | ProSiteProfiles | DOG1 domain profile. | 145 | 320 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed11g2301 | 320 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 79 | 94 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2301 | 320 | FunFam | BZIP family transcription factor | 75 | 124 | - | - | |
Sed11g2301 | 320 | Coils | Coil | 95 | 122 | - | - | |
Sed11g2301 | 320 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 1 | 308 | - | - | |
Sed11g2301 | 320 | SMART | brlzneu | 70 | 132 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2301 | 320 | SUPERFAMILY | Leucine zipper domain | 76 | 117 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2301 | 320 | Coils | Coil | 244 | 264 | - | - | |
Sed11g2301 | 320 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 74 | 118 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed11g2301 | 320 | CDD | bZIP_HBP1b-like | 76 | 127 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0671 | Sed-Chr3:4046145 | Sed11g2301 | Sed-Chr11:36090263 | 3.80E-136 | dispersed | |
Sed11g2301 | Sed-Chr11:36090263 | Sed11g2304 | Sed-Chr11:36090263 | 4.70E-173 | dispersed | |
Sed11g2300 | Sed-Chr11:36090263 | Sed11g2301 | Sed-Chr11:36090263 | 8.60E-126 | tandem | |
Sed11g2301 | Sed-Chr11:36090263 | Sed11g2302 | Sed-Chr11:36090263 | 4.10E-116 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40061 | PF14144 | DOG1 | 1.80E-29 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed11g2301 | K14431 | - | csv:101217648 | 487.263 |