Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2301 ATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCATCTATGAGCCATTTCACCACATCAACTCTTGGGGAACTTCCTTCGGTACTCGGCTAGATACAGCCATATCTTCTACTATAAAACTGGACGACTGTGCACACACTAACCCCGAGTTTAATCCTTTTGAATCGATGGATCATCTCGAGAGCAGCCAAGAAATGAACAAACCAATCTACGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGCTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGCTGTATACACGAGCTGCTTAGTAGATACCAGCCACTTGGGATTTGGTGGATTGGTGAGCCCAGGGATTGCTGAGTTTGAAGTGGAATACAATCACTGGGTTGAAGTGCAAGAGAGGCAGGTCACCGAGCTCAGAAACGCGGTGCAAGTTCCTATAACCGATATCGAACTGCAAATGTTAGTGGAGCGCGTCTTAAACCATTACCACAGCCTGTTTTCCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCTGAGCGGTTTTTCCTCTGGATTGGAGGATTTCGCCCATCAGAGTTGCTAAATGTTCTCAAGTCATGCTTCGAGCCATTAAACGAACAACAAAGAGTCGATATCCACAATTTGCAACAATCTTCTCGGCAAGCTGAAGATGCTCTCTCACAGGGAATGGATAAATTGCACCTAAATCTATCCCTTTGCATTGCCAATAATCCTCTAGGAAGCTATATTTCTCAGATGAGTGATGGGATGGAGAGACTAGAAGCATTGGAAAACTTTGTAAGCCAGGTAATGTGCTGCATTTTCTTTCACAATAAATGGAGTTGA 963 44.03 MSSSSTQLYASRMGIIYEPFHHINSWGTSFGTRLDTAISSTIKLDDCAHTNPEFNPFESMDHLESSQEMNKPIYDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKAVYTSCLVDTSHLGFGGLVSPGIAEFEVEYNHWVEVQERQVTELRNAVQVPITDIELQMLVERVLNHYHSLFSMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKSCFEPLNEQQRVDIHNLQQSSRQAEDALSQGMDKLHLNLSLCIANNPLGSYISQMSDGMERLEALENFVSQVMCCIFFHNKWS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36090263 36092615 + Sed0016927.3 Sed11g2301 730947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2301 320 Pfam Seed dormancy control 162 237 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g2301 320 Gene3D - 75 129 - -
Sed11g2301 320 Pfam bZIP transcription factor 76 114 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2301 320 ProSiteProfiles DOG1 domain profile. 145 320 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g2301 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2301 320 FunFam BZIP family transcription factor 75 124 - -
Sed11g2301 320 Coils Coil 95 122 - -
Sed11g2301 320 PANTHER TRANSCRIPTION FACTOR TGA9 1 308 - -
Sed11g2301 320 SMART brlzneu 70 132 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2301 320 SUPERFAMILY Leucine zipper domain 76 117 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2301 320 Coils Coil 244 264 - -
Sed11g2301 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 74 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2301 320 CDD bZIP_HBP1b-like 76 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0671 Sed-Chr3:4046145 Sed11g2301 Sed-Chr11:36090263 3.80E-136 dispersed
Sed11g2301 Sed-Chr11:36090263 Sed11g2304 Sed-Chr11:36090263 4.70E-173 dispersed
Sed11g2300 Sed-Chr11:36090263 Sed11g2301 Sed-Chr11:36090263 8.60E-126 tandem
Sed11g2301 Sed-Chr11:36090263 Sed11g2302 Sed-Chr11:36090263 4.10E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40061 PF14144 DOG1 1.80E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2301 K14431 - csv:101217648 487.263