Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2303 ATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCATCTATGAGCCATTTCACCACATCAACTCTTGGGGAACTTCCTTCGGTACTCGGCTAGATACAGCCATATCTTCTACTATAAAACTGGACGACTGTGCACACACTAACCCCGAGTTTAATCCTTTTGAATCGATGGATCATCTCGAGAGCAGCCAAGAAATGAACAAACCAATCTACGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGCTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGCTGTATACACGAGCTGCTTAGTAGATACCAGCCACTTGGGATTTGGTGGATTGGTGAGCCCAGGGATTGCTGAGTTTGAAGTGGAATACAATCACTGGGTTGAAGTGCAAGAGAGGCAGGTCACCGAGCTCAGAAACGCGGTGCAAGTTCCTATAACCGATATCGAACTGCAAATGTTAGTGGAGCGCGTCTTAAACCATTACCACAGCCTGTTTTCCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGTGTATGGAGAACATCGGCTGAGCGGTTTTTCCTCTGGATTGGAGGATTTCGCCCATCAGAGTTGCTAAATGTAACAACTTACCTCATAGTTAGGTTTATGTTTCACAATGGTTGCTGCTCATTCCATGTTATGCATTCCTTCTTTTTTGTTCTACCACATTACAAGCGTGTTTTGTTTTTCTTACACCTAATTGTATTTCAGTTATACTAA 843 43.3 MSSSSTQLYASRMGIIYEPFHHINSWGTSFGTRLDTAISSTIKLDDCAHTNPEFNPFESMDHLESSQEMNKPIYDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKAVYTSCLVDTSHLGFGGLVSPGIAEFEVEYNHWVEVQERQVTELRNAVQVPITDIELQMLVERVLNHYHSLFSMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVTTYLIVRFMFHNGCCSFHVMHSFFFVLPHYKRVLFFLHLIVFQLY 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36090263 36092112 + Sed0016927.5 Sed11g2303 730949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2303 280 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2303 280 Coils Coil 95 122 - -
Sed11g2303 280 SUPERFAMILY Leucine zipper domain 76 117 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2303 280 PANTHER TRANSCRIPTION FACTOR TGA9 1 235 - -
Sed11g2303 280 Pfam Seed dormancy control 162 235 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g2303 280 FunFam BZIP family transcription factor 75 124 - -
Sed11g2303 280 Pfam bZIP transcription factor 76 115 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2303 280 ProSiteProfiles DOG1 domain profile. 145 280 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed11g2303 280 SMART brlzneu 70 132 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2303 280 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 74 118 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed11g2303 280 CDD bZIP_HBP1b-like 76 127 - -
Sed11g2303 280 Gene3D - 75 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2303 Sed-Chr11:36090263 Sed13g0972 Sed-Chr13:7517364 2.20E-57 dispersed
Sed11g2302 Sed-Chr11:36090263 Sed11g2303 Sed-Chr11:36090263 9.60E-74 tandem
Sed11g2303 Sed-Chr11:36090263 Sed11g2304 Sed-Chr11:36090263 6.70E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40062 PF14144 DOG1 9.60E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2303 K14431 - csv:101217648 374.015