Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed11g2306 ATGGCTTTGAGTGTTGTGAATCCAACAATTCTCGCGTTTTTGTCCTTACTTCTTTTGGTTGGTTGTTGCGGCTCGGCAGCTAATGTGGTATTGATTGGGACCAACCTCTCTCTTTCCTTCGACTCCATTGAAGCTAATTTCGCTCCTTCAATAAAAAGTTCAGGCGAGCATGGAGTGTTGTATGTGGCAAAGCCTCTTGATGCATGCTCGACATTGGAAAATAAAGTTGAGCTTCCTGTAAACTCTTGTTCACCATTTGCGCTTATAATTAGAGGAGGGTGTAGCTTCGACGATAAAGTGAGGAGAGCTCAAGTGGCTGGATTTAAAGCTGCAATTGTATATGACAATGCTGATGGCGGACTAATTGCAATGGCAGGGAGCTCAACTGGTATTAAAATACCTGCTGTGTTTGTTACTAAAGCATCCGGTGAGATGTTGAAGAAGTACACAGGCTTGGCCAACGTTGAGACATGGATAGTTACAAGCTTTGAAAACTCTGCATGGTCCATCATGGCTATCTCCTTTATTTCTCTTCTTGCAATGTCTGCAATTCTTGCTACTTGTTTCTTCGTTCATAGGCATCGAATAAGTCGAGGACATCCTCGATTTTCTCAATCTGAAGAGTTTCAGGGCATGAGCAGACGTGTAGTAAAAGCAATGCCTAGCCTGATATTTACTACTCCTTTAGAGGATAATTGTACATCAGTCACATGTGCCATATGCCTTGAGGATTATACTACTGGTGAGAAGCTCAGAATTTTACCCTGTCGTCACAAATTTCATGCCTTCTGTGTGGACTCTTGGCTTACTGCCTGGAGAACTTTCTGCCCGGTCTGCAAGCGAGATGCAAGAACTAGCACCGGTGATCCACCACCATCAGAATTCACACCATTGCTTTCTAGCACTGCCAGCTCTTTTGCTTCCTCCTCAATATTATCTTCTGTGAGATCATCATTACCCCCAAGTTCTGCCATACATATATCCCCACCATTAAGATCGCCTTCGGTGTCTCGGAACCACTCTCTCTCAAGCACCCCTTACCATCAGCAGTCTCTTAGATCTTCCTTCCGCCAATCTCCGTCCTTGGGCATGAGCAGAAGTTCAGTCGAAATCCGAAATGCATCTTCCCAAAGATCTTATACTTCTCATTTGGTTTCACCATATTCCTCGTGTTACCCATCAATATCACCTTTACATTCGAGATACATGATTCCACTTATTCCAAGTTCAAGCAATGCCTCGCCAAGCATCATTGGTTCTTCCAGTCATCGACATAACCCCCTGCATATGAGCGAGTCAGCTGCAAGTTTTTCTCCATTTGCTTCGGCTCATTCTCTTCCTGAATGCTGA 1350 44.15 MALSVVNPTILAFLSLLLLVGCCGSAANVVLIGTNLSLSFDSIEANFAPSIKSSGEHGVLYVAKPLDACSTLENKVELPVNSCSPFALIIRGGCSFDDKVRRAQVAGFKAAIVYDNADGGLIAMAGSSTGIKIPAVFVTKASGEMLKKYTGLANVETWIVTSFENSAWSIMAISFISLLAMSAILATCFFVHRHRISRGHPRFSQSEEFQGMSRRVVKAMPSLIFTTPLEDNCTSVTCAICLEDYTTGEKLRILPCRHKFHAFCVDSWLTAWRTFCPVCKRDARTSTGDPPPSEFTPLLSSTASSFASSSILSSVRSSLPPSSAIHISPPLRSPSVSRNHSLSSTPYHQQSLRSSFRQSPSLGMSRSSVEIRNASSQRSYTSHLVSPYSSCYPSISPLHSRYMIPLIPSSSNASPSIIGSSSHRHNPLHMSESAASFSPFASAHSLPEC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36098855 36102446 - Sed0007097.1 Sed11g2306 730952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed11g2306 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 198 285 - -
Sed11g2306 449 Pfam Ring finger domain 237 280 IPR001841 -
Sed11g2306 449 ProSiteProfiles Zinc finger RING-type profile. 238 280 IPR001841 -
Sed11g2306 449 SUPERFAMILY RING/U-box 231 296 - -
Sed11g2306 449 CDD PA_C_RZF_like 25 167 IPR044744 -
Sed11g2306 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 285 IPR013083 -
Sed11g2306 449 Gene3D - 29 161 - -
Sed11g2306 449 Pfam PA domain 86 146 IPR003137 -
Sed11g2306 449 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 45 299 IPR051653 -
Sed11g2306 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 27 160 - -
Sed11g2306 449 MobiDBLite consensus disorder prediction 328 370 - -
Sed11g2306 449 SMART ring_2 238 279 IPR001841 -
Sed11g2306 449 SUPERFAMILY PA domain 84 148 IPR046450 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed11g2306 K15692 - - csv:101218128 680.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2306 Sed-Chr11:36098855 Sed14g1642 Sed-Chr14:24590175 7.20E-10 dispersed
Sed11g2306 Sed-Chr11:36098855 Sed03g0673 Sed-Chr3:4061598 8.60E-197 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1441 . . . . . . . . . . . . . . Sed11g2306 . . Bhi04g02514 Tan11g0071 Cmetu03g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00772 Cam11g0807 Cec11g0788 Cco11g0794 Clacu11g1051 Cmu11g0912 Cre11g1252 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005523 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 40