Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0015 ATGGGGTTTGTCCACTTGGAAGACCACAACCAGCAGCAGCAGCTTCTATTAAGCTTCTTGGCACCCACCACCGTGAACACAGCAAGCACCATGCCAGCTACTACTACTGCGCATCACCATCATCATCATGCCCACCTCCAGGTGGGAACAGTGGATCCAGAGTGTGGAGATCATAAGATGGTGATGATGATGGGGAGTAATTATAAAGTGAAGGGGGTGAGGAGAAAGCTTCGAGAGCCGCGTTTCTGCTTCCAGACGAGAAGCGAGGTAGATGTGCTGGACGATGGGTATAAATGGAGAAAATATGGGCAAAAGGTGGTGAAGAACAGCCTTCATCCGAGGAGCTACTACCGCTGCACGCATAGCAACTGCCGAGTGAAGAAGAGAGTGGAGCGGCTGTCCGAGGATTGCCGGATGGTCATAACCACCTACGAGGGAAGACACAACCACTCTCCTTGCGACGACTCCAACTCTTCTGACCACGAACAACAACAACAACAACAACCACCCTTTATTACATCCTTCTGA 528 50.95 MGFVHLEDHNQQQQLLLSFLAPTTVNTASTMPATTTAHHHHHHAHLQVGTVDPECGDHKMVMMMGSNYKVKGVRRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHEQQQQQQPPFITSF 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 102659 103640 + Sed0019486.1 Sed12g0015 730971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0015 175 Pfam WRKY DNA -binding domain 94 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0015 175 ProSiteProfiles WRKY domain profile. 88 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0015 175 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 162 IPR044810 GO:0003700(InterPro)
Sed12g0015 175 SMART WRKY_cls 93 152 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0015 175 FunFam WRKY transcription factor 57 79 153 - -
Sed12g0015 175 MobiDBLite consensus disorder prediction 158 175 - -
Sed12g0015 175 MobiDBLite consensus disorder prediction 148 175 - -
Sed12g0015 175 SUPERFAMILY WRKY DNA-binding domain 85 151 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0015 175 Gene3D WRKY domain 79 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1819 Sed-Chr2:52807268 Sed12g0015 Sed-Chr12:102659 4.30E-51 dispersed
Sed05g3824 Sed-Chr5:45835783 Sed12g0015 Sed-Chr12:102659 1.70E-34 dispersed
Sed11g2032 Sed-Chr11:34377014 Sed12g0015 Sed-Chr12:102659 1.10E-24 dispersed
Sed11g2033 Sed-Chr11:34377014 Sed12g0015 Sed-Chr12:102659 1.10E-24 dispersed
Sed12g0015 Sed-Chr12:102659 Sed14g1557 Sed-Chr14:23766438 1.10E-27 dispersed
Sed12g0015 Sed-Chr12:102659 Sed12g0016 Sed-Chr12:102659 1.20E-72 tandem
Sed12g0015 Sed-Chr12:102659 Sed02g1818 Sed-Chr2:52807268 4.60E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40067 PF03106 WRKY 8.70E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0015 - - - 0.0