Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0016 ATGCAGCAGCAAGAAATGGGGTTTGTCCACTTGGAAGACCACAACCAGCAGCAGCAGCTTCTATTAAGCTTCTTGGCACCCACCACCGTGAACACAGCAAGCACCATGCCAGCTACTACTACTGCGCATCACCATCATCATCATGCCCACCTCCAGGTGGGAACAGTGGATCCAGAGTGTGGAGATCATAAGATGGTGATGATGATGGGGAGTAATTATAAAGTGAAGGGGGTGAGGAGAAAGCTTCGAGAGCCGCGTTTCTGCTTCCAGACGAGAAGCGAGGTAGATGTGCTGGACGATGGGTATAAATGGAGAAAATATGGGCAAAAGGTGGTGAAGAACAGCCTTCATCCGAGGAGCTACTACCGCTGCACGCATAGCAACTGCCGAGTGAAGAAGAGAGTGGAGCGGCTGTCCGAGGATTGCCGGATGGTCATAACCACCTACGAGGGAAGACACAACCACTCTCCTTGCGACGACTCCAACTCTTCTGACCACGAACAACAACAACAACAACAACCACCCTTTATTACATCCTTCTGA 543 50.83 MQQQEMGFVHLEDHNQQQQLLLSFLAPTTVNTASTMPATTTAHHHHHHAHLQVGTVDPECGDHKMVMMMGSNYKVKGVRRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHEQQQQQQPPFITSF 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 102659 103640 + Sed0019486.2 Sed12g0016 730972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0016 180 MobiDBLite consensus disorder prediction 163 180 - -
Sed12g0016 180 MobiDBLite consensus disorder prediction 153 180 - -
Sed12g0016 180 SMART WRKY_cls 98 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0016 180 ProSiteProfiles WRKY domain profile. 93 155 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0016 180 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 167 IPR044810 GO:0003700(InterPro)
Sed12g0016 180 SUPERFAMILY WRKY DNA-binding domain 90 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0016 180 Gene3D WRKY domain 84 158 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0016 180 FunFam WRKY transcription factor 57 84 158 - -
Sed12g0016 180 Pfam WRKY DNA -binding domain 99 155 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1818 Sed-Chr2:52807268 Sed12g0016 Sed-Chr12:102659 3.60E-51 dispersed
Sed12g0016 Sed-Chr12:102659 Sed14g1557 Sed-Chr14:23766438 1.20E-27 dispersed
Sed12g0015 Sed-Chr12:102659 Sed12g0016 Sed-Chr12:102659 1.20E-72 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40068 PF03106 WRKY 9.20E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0016 - - - 0.0