Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0020 ATGCACCACATGGACAGGATTCCAGACTCTAAACCACTTCCCTTGCTACTCCCTCTAGAGATGCTTCCCGAATCAAACCTACGCCACCCCAAACGCCATATCCCCCCCTCCTCCCCCAACCAACCTCCCCACTGGCCCAACCTCACCCAACTCGGTACATCCTTTCCCCATGGATTTCAAGATCTACGACTTTCTTCTGCACCTTCCCACCACCGCCCATCGAACCCCAAATCCTCTCATCCTTCGGGACACCAACCCCCGAATCTCCGCACTGCCTCTTTCATTGACCAAGGCAGTCCCAGCTCCTTCTTTGGGGCTAGCCACCCGCCTGAGCCCCTCGACATGGATCTAATCACAACCGTTCATGTCCCCAAACCTGACCCCGCCTGCTTGATCAAGAGTTTCTCCCTCCACAAGGGGGGTCCCTTTCTTGAGGATCTCTCCATCAGGGTTCCACCCAACAAACCAAGCCCTACCGATAGCTTGCTTCATGGACATCAACATCCTCATGACCATGATCGTGAACAATCCCCCCGTGACTTTCCTCGTGCATCCCAAACCTCTTTCCTTCCCCCGGATCCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCGAGTGGCAATGTAAGTCCACACAGTAGCATTGGCAGCAGTGGAGTTGTCACAGCCATGAGCATTGGTAATAGTTGCGCAAGCACATATCGGAGTGATGGAATGATTAGTATCGAAAGAAACTGCTGTGAGAGTACCAAAGGAAGCATGAGAGGGGACTCCCTCGAGAGTGCAAAAACAAGCATGAGTCGTGCTAGTGATAGCAGCGGTCTTAGTGATGATAGCAGTTGGAGCAACATTACAGGGAGTGCTAATAAGCCCCACAAAGGAAACGACCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCCAGAGATGGAATACTAGGCATGAGCCATTTTAGACTGCTCAAAAGACTTGGATGTGGTGATATTGGCAGTGTTTATCTTTCCGAGCTAAGCGGGACTCGGTGTTATTTTGCGATGAAAGTCATGGACAAGGCATCACTTGCTATCAGGAAGAAGCTAACCAGAGCTCAGACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTCCTGCCCACTTTGTACACCCACTTTGAGACGGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCTGGGGGAGACCTGCACACTTTGAGGCAACGACAGCCAGGGAAACACTTCTCTGAGTATGCCGCTAGATTTTATGCAGCAGAGGTTCTACTGGCACTTGAATATCTTCATATGCTCGGAGTTGTCTATAGGGACTTGAAACCAGAGAATGTACTGGTTCGTGATGATGGCCACATAATGCTCTCAGATTTTGACCTTTCACTAAGATGTGCAGTGTCGCCCACCCTGATAAAATCATCATACGATTCTGACCCATCAAAACGAGGTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCGTCATCAGCTTGCATCCAACCTGCATGCTTTATTCCTCGACTCTTTCCTCAAAAAAGCAAAAAGAAAAGTTCCAAGCCTCGAAGTGACCTGGGGTTGCAATCAAGTACACTTCCTGAGCTGGTAGCAGAGCCTACTGCCGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTTGCCCCTGAAATTATTAAAGGTGAGGGTCATGGAAGTGCTGTTGATTGGTGGACCTTTGGCATTTTCTTGCATGAGCTATTGTATGGAAAAACCCCATTCAAGGGATCGGGAAACAGGGCCACATTATTCAATGTAGTAGGGCAACAACTGAAGTGCCCTGAGTCTCCAGCAACCAGTTATGCTAGCCGAGATCTTATTAAAGGTTTACTAGTAAAAGAGCCCCAGCTTCGACTCGGCGTGAAGAGGGGTGCAACGGAGATCAAGCAGCATCCTTTCTTTGAGGGCGTGAATTGGGCTTTGATTCGATGCAGCACACCCCCAGAAGTGCCAAGACCAATGGAAGCCGAACTGTCAAAGTTTGGGGTAGTTGACACAACAAGGGTTGGCGGTGTCAGCAGTAGCAACAGCAGCAGCAGTAAGAGGATAGTAGGTACGGATGTTGTGAAGTCTGGTGGACAATATCTTGACTTCGAGTTCTTTTAA 2157 49.33 MHHMDRIPDSKPLPLLLPLEMLPESNLRHPKRHIPPSSPNQPPHWPNLTQLGTSFPHGFQDLRLSSAPSHHRPSNPKSSHPSGHQPPNLRTASFIDQGSPSSFFGASHPPEPLDMDLITTVHVPKPDPACLIKSFSLHKGGPFLEDLSIRVPPNKPSPTDSLLHGHQHPHDHDREQSPRDFPRASQTSFLPPDPEEKECVWDASLPPSGNVSPHSSIGSSGVVTAMSIGNSCASTYRSDGMISIERNCCESTKGSMRGDSLESAKTSMSRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKSSYDSDPSKRGAFCVQPACIEPSSACIQPACFIPRLFPQKSKKKSSKPRSDLGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKCPESPATSYASRDLIKGLLVKEPQLRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELSKFGVVDTTRVGGVSSSNSSSSKRIVGTDVVKSGGQYLDFEFF 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 123872 128946 - Sed0003714.2 Sed12g0020 730976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0020 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0020 718 MobiDBLite consensus disorder prediction 27 110 - -
Sed12g0020 718 Gene3D Transferase(Phosphotransferase) domain 1 403 470 - -
Sed12g0020 718 MobiDBLite consensus disorder prediction 164 180 - -
Sed12g0020 718 SUPERFAMILY Protein kinase-like (PK-like) 301 683 IPR011009 -
Sed12g0020 718 MobiDBLite consensus disorder prediction 252 292 - -
Sed12g0020 718 FunFam serine/threonine-protein kinase D6PK-like 546 669 - -
Sed12g0020 718 FunFam serine/threonine-protein kinase D6PK-like 403 470 - -
Sed12g0020 718 PANTHER FLIPPASE KINASE 1-RELATED 219 673 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed12g0020 718 Gene3D Phosphorylase Kinase; domain 1 317 402 - -
Sed12g0020 718 Gene3D Transferase(Phosphotransferase) domain 1 546 669 - -
Sed12g0020 718 ProSiteProfiles Protein kinase domain profile. 319 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0020 718 SMART serkin_6 319 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0020 718 MobiDBLite consensus disorder prediction 44 60 - -
Sed12g0020 718 FunFam Serine/threonine-protein kinase D6PK-like 317 402 - -
Sed12g0020 718 MobiDBLite consensus disorder prediction 147 218 - -
Sed12g0020 718 MobiDBLite consensus disorder prediction 252 296 - -
Sed12g0020 718 CDD STKc_phototropin_like 317 670 - -
Sed12g0020 718 MobiDBLite consensus disorder prediction 67 104 - -
Sed12g0020 718 Pfam Protein kinase domain 320 469 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0020 718 Pfam Protein kinase domain 548 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0020 Sed-Chr12:123872 Sed14g1270 Sed-Chr14:21747693 4.40E-179 dispersed
Sed12g0019 Sed-Chr12:123872 Sed12g0020 Sed-Chr12:123872 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79951 PF00069 Pkinase 6.00E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0020 - - - 0.0