Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0039 ATGGCCGATGAGTTAGGGCTCACTTTGAGTTTAGGGTTTCCTTCTTTTCAGCCAACTCACTTCAACAGGCCCTTCAACTCCCTGCATACTCACATCCACAACAGCTCTTGGAATGAATCTCTTCAGTTTTCTGATCGAAACGCCGATTCCAGGTCGTTCATTCGGGGAATCGACGTGAATCGGATTCCGACAGGTGTGGATGGCGACGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATCAGTGGAAAGAGGAGCGAAAGAGAAGCAGAGGCGGAGGCGGAGGGAGCGTCCTGCTCGAGAGGGAGCGACGACGAAGACGCCGCCGACGCCGCGAGAAAGAAGCTGAGGCTATCAAAGGAACAGTCCATAGTGCTTGAGGAGACGTTCAAAGAGCACAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCCAGGCAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGCTGAAGCAGACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAAGAGAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTACATGCACATGAATCCTCCTACAACCCTCACCATGTGCCCTCAGTGTGAGCGTGTGGCCGTTTCCTCCTCTTCTTCGACCTCAGCTGCTCCGACCCGCCATCCATCCGCAGCTGGCGTGCAGCGTTCCTCGATGGCCATCAACCCGTGGGCGATGTTGCCCATTCAACGCTGA 807 52.79 MADELGLTLSLGFPSFQPTHFNRPFNSLHTHIHNSSWNESLQFSDRNADSRSFIRGIDVNRIPTGVDGDEENGVSSPNSTISSISGKRSEREAEAEAEGASCSRGSDDEDAADAARKKLRLSKEQSIVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAAPTRHPSAAGVQRSSMAINPWAMLPIQR 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 269598 272319 + Sed0006646.1 Sed12g0039 730995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0039 268 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677(InterPro)
Sed12g0039 268 SUPERFAMILY Homeodomain-like 107 173 IPR009057 -
Sed12g0039 268 FunFam Homeobox-leucine zipper protein 18 102 177 - -
Sed12g0039 268 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed12g0039 268 MobiDBLite consensus disorder prediction 87 116 - -
Sed12g0039 268 MobiDBLite consensus disorder prediction 61 116 - -
Sed12g0039 268 Pfam Homeobox associated leucine zipper 172 206 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0039 268 Coils Coil 178 208 - -
Sed12g0039 268 Pfam HD-ZIP protein N terminus 3 92 IPR006712 GO:0005634(InterPro)
Sed12g0039 268 Pfam Homeodomain 116 170 IPR001356 GO:0003677(InterPro)
Sed12g0039 268 SMART HOX_1 114 176 IPR001356 GO:0003677(InterPro)
Sed12g0039 268 MobiDBLite consensus disorder prediction 71 86 - -
Sed12g0039 268 MobiDBLite consensus disorder prediction 234 253 - -
Sed12g0039 268 CDD homeodomain 116 173 IPR001356 GO:0003677(InterPro)
Sed12g0039 268 Gene3D - 120 170 - -
Sed12g0039 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 5 242 IPR050762 -
Sed12g0039 268 SMART halz 172 215 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1686 Sed-Chr4:31544952 Sed12g0039 Sed-Chr12:269598 4.50E-71 dispersed
Sed11g1659 Sed-Chr11:31869893 Sed12g0039 Sed-Chr12:269598 5.10E-30 dispersed
Sed12g0039 Sed-Chr12:269598 Sed13g1053 Sed-Chr13:8970251 5.70E-47 dispersed
Sed12g0039 Sed-Chr12:269598 Sed12g1276 Sed-Chr12:9306669 5.40E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40072 PF04618 HD-ZIP_N 2.60E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0039 K09338 - csv:101222132 388.267