Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0058 ATGAACGTGAAAACTCCGGCGACGAGGACTCGTGTTGGGAACTACGAGCTCGGAAAGACCCTCGGGGAGGGCTCTTTCGCTAAGGTCAAGTTTGCCAAAAACATTCACAACGGTCATTATGTCGCCATCAAGATTCTTGATCGTGAACAAGTTCTTCGACACAAGATGGTCGAACAGATCAAAAGAGAGATATCAACTCTTAAAGTTATAAAGCATCCGAATGTTGTTCAGATTTTTGAGGTTATGGGAAGCAAATCGAAAATCTACATTGTTCTTGAGTTTGTAGATGGAGGCGAGCTCTTCGACAAAATAGCTGCAAAGGGAAGGCTTAAAGAGGACGAGGCAAGGAAATATTTCCATCAACTTATTAATGCTGTTGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTGGACTCGCATGGTGTTCTTAAAGTATCAGATTTTGGATTGAGTGCATTTTCACAGCAAGTTCGAGGGGATGGTCTTCTTCACACTGCTTGTGGGACTCCAAACTACGTGGCGCCCGAGGTCCTCCTTGACAAAGGGTATGATGGTACATCGTCTGATATTTGGTCATGTGGGGTCATTCTCTTTGTTCTTATGGCTGGATTTTTGCCTTTCGACGAGGCAAATCTAATGTCTTTGTATAAAAAAATTACCAAGGCTGATTTCTGCTTTCCACCATGGTTCTCAAATGGTGCCAGGAAACTAATTGGTCGAATTCTTGATCCAAATCCTCTTACTCGAATAACTGTAGCTGAAATGCAAGAAAATGAATGGTTCAAGAAGGGCTACACTCCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTCGATGCCGCTTTTAGCAGCTCGAAGGAACATCTTGTGACTGAAAAGAAAGAGAAGCCAGTGTCCATGAATGCTTTTGAGCTTATCTCAAGGTCACCAGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGTAAAGAGAGAAACCCGGTTTACTTCGCAAAGCTCTGCAAACGAGATCATTTTGAAGATTGAAGAAACTGCAAAACCTATGGGATTCAATGTACGCAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTGTTCGAGGTTGCTCCTTCCTTGCATATGGTGGAGCTTCGCAAAACGGGTGGTGATACGCTTGAGTTTCACAAGTTCTACAAAAGCTTCACTTCAGGATTAAAAGACATAATGTGGAGAACTGATGAAAATACTGTAGAAGGGAGCTAA 1326 42.84 MNVKTPATRTRVGNYELGKTLGEGSFAKVKFAKNIHNGHYVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVVQIFEVMGSKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVLLDKGYDGTSSDIWSCGVILFVLMAGFLPFDEANLMSLYKKITKADFCFPPWFSNGARKLIGRILDPNPLTRITVAEMQENEWFKKGYTPAHFEVEEDITLDDVDAAFSSSKEHLVTEKKEKPVSMNAFELISRSPGFSLENLFEKQKAVVKRETRFTSQSSANEIILKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFTSGLKDIMWRTDENTVEGS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 321760 327728 - Sed0002235.1 Sed12g0058 731014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0058 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0058 441 CDD CIPK_C 313 428 - -
Sed12g0058 441 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Sed12g0058 441 SUPERFAMILY Protein kinase-like (PK-like) 12 292 IPR011009 -
Sed12g0058 441 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Sed12g0058 441 Pfam NAF domain 309 369 IPR004041 GO:0007165(InterPro)
Sed12g0058 441 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Sed12g0058 441 Gene3D Kinase associated domain 1, KA1 306 432 - -
Sed12g0058 441 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0058 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed12g0058 441 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Sed12g0058 441 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Sed12g0058 441 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Sed12g0058 441 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0058 441 FunFam Non-specific serine/threonine protein kinase 306 432 - -
Sed12g0058 441 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2652 Sed-Chr8:38683291 Sed12g0058 Sed-Chr12:321760 8.90E-181 dispersed
Sed09g0119 Sed-Chr9:918470 Sed12g0058 Sed-Chr12:321760 3.80E-71 dispersed
Sed09g0120 Sed-Chr9:918470 Sed12g0058 Sed-Chr12:321760 3.80E-71 dispersed
Sed12g0058 Sed-Chr12:321760 Sed14g1595 Sed-Chr14:24086252 2.40E-175 dispersed
Sed12g0058 Sed-Chr12:321760 Sed01g1699 Sed-Chr1:12347214 5.00E-181 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79952 PF00069 Pkinase 9.40E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0058 - - - 0.0