Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0100 ATGGGTTCTCAGATACCAAAAACTGTAAGCTTTGAACAACCAACTTATGATTTCCATGACAAATATGAATTCTACCAAAATAGAAGCAGGCTGTCTCCAAGGTCAATATTGGAATGCATACAGAGAGGATTTTCAAGTGCTTCTAAGATCTTCAGAAGGGTAAAGCATTCAGGTGATCGGCCAGTAAAGAAATCAGAATTTTGGAATAAAATTCTTGATCCACAAAAGCCTTTTCTTCGGCAATGGAACAAGATATTTGTGTTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTCTCTTCTTTTACACCCCAGAGTTTAATGAAGGCAAACATTGCCTAACCGTGAACAAAAATCTTATGATCATTGCTTCTGTTCTTCGTTCATTCATCGACTTATTTTATCTACTTCACATGATCTTCGAGTTTCGAACTGGATATCTGCCCCCTTCTTTACCAGTATTTGGAAGTGGCGAATTAATCAAAGATCCAGCAGCTATAGCAAAGAGATACCTCTCTTCAAACTTCTTGATTGATATCTTATCCATTCTCCCAATGCCTCAGCTATTGGTATTTGTAATTGTACCTCTAGAGAAAGGCGTGGTTCAATGGAAGACGACAGACATCCTGAAGCTTGCGGTTCTTTTGCAATATATTCCAAGGCTTCTTCGAATTTATCCATTATACAGAGAAGTAACAAGAACTTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCTTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAACAAAATGCTGGCTGGAAGGATGCAAAAACTGTTCAGACACAATTCTGTACTGTGGAGGTAAACATCTTAGTAAAGAAATGTACGCATCTATTAGTGAGTATTGCTCTCCTAAGGAGTCTAAAGATGACAATAAGACCTTCGAGCTCGGGATGTTCGCCGAAGCCCTTAAGTTTAATTTAACCGAGACGACAGGTTTTCACCGCAAATTCTTCTATTCCTTCTGGTGGGCTCTACGAAATGTCGGCTCAAGTGGACAAAACCTTGAAGTAACCCACTATATAGGGGATGTTTTTTTTGCTGTCTTCATTGCCTTTCTTGGTTTAGTTTTGTTTGCCTTACTCATTAGCAATATTCAGAAATATTTGCAGTCAACAACTGTGAAACTAGAGCAGATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCGGATAACTTAAGGCAGCGTATTAGGCGATACGATCAATACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCAAAAGACCTTAGGAAAGACATCAAACGCCATCTTTGCTTGGCACTTCTCAAGAAAGTGCCGCTTTTCAGCAGCATGGATAAGCAACTGTTGGACTCGATGTGCGAATATCTCAATCCTGTGTTGTTCACAGAAGAGAGCTTCATTTTGCAAGAGGGTGATCCAATTGATATGATGCTATTCATCATGAAAGGAAAGCTAGCTACCATTATTACTTACGGTAGGAAAAACGACTTGCACTCAGCCACTCTTAATGCTGGCGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCTATGGATCCAATCTCCACTTCTATTCCCATTTCAACCAGGACAGTTAAAACTCAAACTGAGGTTGAAGCCTTTGCTCTAAAGGCTCCTGATCTGAAGTATGTTACTAGCCAGTTCCACACCCAGCGCCTCAATAGCAAGCAATTTCAATTCTCAGTGAAATTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTATACAATACAAGAAGCTTGGCATGATTACTGTGAAAGAAAGAAGAGAGGGGGCGGAGATAGCCGGTTTCAAGATGCATTGGCTAAAATAGTTGGCCCCTCGACGAGCTTCGGTGCCACTCTTTATGCATCTGTATTCATATCGCATTTGCTGCAAGCTGTGCGGGGAGATCAACACGAGCAAACTGCTCAACTCACACGAGTGATGACACTACCGCCGCCTCCGAAGCCAGACGACGAGCAAGGCAACCCAAGCTTCACCATCTTGAATCTTTAA 2115 41.8 MGSQIPKTVSFEQPTYDFHDKYEFYQNRSRLSPRSILECIQRGFSSASKIFRRVKHSGDRPVKKSEFWNKILDPQKPFLRQWNKIFVLSSVIAVAVDPLFFYTPEFNEGKHCLTVNKNLMIIASVLRSFIDLFYLLHMIFEFRTGYLPPSLPVFGSGELIKDPAAIAKRYLSSNFLIDILSILPMPQLLVFVIVPLEKGVVQWKTTDILKLAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQTKCWLEGCKNCSDTILYCGGKHLSKEMYASISEYCSPKESKDDNKTFELGMFAEALKFNLTETTGFHRKFFYSFWWALRNVGSSGQNLEVTHYIGDVFFAVFIAFLGLVLFALLISNIQKYLQSTTVKLEQMRINRRDAEHWMAHRMLPDNLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRKDIKRHLCLALLKKVPLFSSMDKQLLDSMCEYLNPVLFTEESFILQEGDPIDMMLFIMKGKLATIITYGRKNDLHSATLNAGDFCGEELVQWAMDPISTSIPISTRTVKTQTEVEAFALKAPDLKYVTSQFHTQRLNSKQFQFSVKFYSHQWKVWAAYTIQEAWHDYCERKKRGGGDSRFQDALAKIVGPSTSFGATLYASVFISHLLQAVRGDQHEQTAQLTRVMTLPPPPKPDDEQGNPSFTILNL 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 564415 570006 - Sed0018629.1 Sed12g0100 731056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0100 704 Pfam Ion transport protein 82 400 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g0100 704 ProSiteProfiles cAMP/cGMP binding motif profile. 473 557 IPR000595 -
Sed12g0100 704 Gene3D Helix hairpin bin 400 464 - -
Sed12g0100 704 FunFam Cyclic nucleotide-gated ion channel 1 400 464 - -
Sed12g0100 704 MobiDBLite consensus disorder prediction 682 704 - -
Sed12g0100 704 CDD CAP_ED 473 604 IPR000595 -
Sed12g0100 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 630 - -
Sed12g0100 704 SUPERFAMILY Voltage-gated potassium channels 73 395 - -
Sed12g0100 704 SUPERFAMILY cAMP-binding domain-like 402 588 IPR018490 -
Sed12g0100 704 Gene3D - 84 397 - -
Sed12g0100 704 Gene3D Jelly Rolls 471 589 IPR014710 -
Sed12g0100 704 SMART cnmp_10 473 602 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1746 Sed-Chr2:52332684 Sed12g0100 Sed-Chr12:564415 4.00E-245 dispersed
Sed12g0100 Sed-Chr12:564415 Sed12g0102 Sed-Chr12:564415 0.00E+00 dispersed
Sed12g0100 Sed-Chr12:564415 Sed12g0101 Sed-Chr12:564415 0.00E+00 tandem
Sed12g0100 Sed-Chr12:564415 Sed02g1743 Sed-Chr2:52318503 1.90E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0100 K05391 - csv:101206492 1059.67