Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0101 ATGGGTTCTCAGATACCAAAAACTGTAAGAAGCAGGCTGTCTCCAAGGTCAATATTGGAATGCATACAGAGAGGATTTTCAAGTGCTTCTAAGATCTTCAGAAGGGTAAAGCATTCAGGTGATCGGCCAGTAAAGAAATCAGAATTTTGGAATAAAATTCTTGATCCACAAAAGCCTTTTCTTCGGCAATGGAACAAGATATTTGTGTTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTCTCTTCTTTTACACCCCAGAGTTTAATGAAGGCAAACATTGCCTAACCGTGAACAAAAATCTTATGATCATTGCTTCTGTTCTTCGTTCATTCATCGACTTATTTTATCTACTTCACATGATCTTCGAGTTTCGAACTGGATATCTGCCCCCTTCTTTACCAGTATTTGGAAGTGGCGAATTAATCAAAGATCCAGCAGCTATAGCAAAGAGATACCTCTCTTCAAACTTCTTGATTGATATCTTATCCATTCTCCCAATGCCTCAGCTATTGGTATTTGTAATTGTACCTCTAGAGAAAGGCGTGGTTCAATGGAAGACGACAGACATCCTGAAGCTTGCGGTTCTTTTGCAATATATTCCAAGGCTTCTTCGAATTTATCCATTATACAGAGAAGTAACAAGAACTTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCTTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAACAAAATGCTGGCTGGAAGGATGCAAAAACTGTTCAGACACAATTCTGTACTGTGGAGGTAAACATCTTAGTAAAGAAATGTACGCATCTATTAGTGAGTATTGCTCTCCTAAGGAGTCTAAAGATGACAATAAGACCTTCGAGCTCGGGATGTTCGCCGAAGCCCTTAAGTTTAATTTAACCGAGACGACAGGTTTTCACCGCAAATTCTTCTATTCCTTCTGGTGGGCTCTACGAAATGTCGGCTCAAGTGGACAAAACCTTGAAGTAACCCACTATATAGGGGATGTTTTTTTTGCTGTCTTCATTGCCTTTCTTGGTTTAGTTTTGTTTGCCTTACTCATTAGCAATATTCAGAAATATTTGCAGTCAACAACTGTGAAACTAGAGCAGATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCGGATAACTTAAGGCAGCGTATTAGGCGATACGATCAATACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCAAAAGACCTTAGGAAAGACATCAAACGCCATCTTTGCTTGGCACTTCTCAAGAAAGTGCCGCTTTTCAGCAGCATGGATAAGCAACTGTTGGACTCGATGTGCGAATATCTCAATCCTGTGTTGTTCACAGAAGAGAGCTTCATTTTGCAAGAGGGTGATCCAATTGATATGATGCTATTCATCATGAAAGGAAAGCTAGCTACCATTATTACTTACGGTAGGAAAAACGACTTGCACTCAGCCACTCTTAATGCTGGCGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCTATGGATCCAATCTCCACTTCTATTCCCATTTCAACCAGGACAGTTAAAACTCAAACTGAGGTTGAAGCCTTTGCTCTAAAGGCTCCTGATCTGAAGTATGTTACTAGCCAGTTCCACACCCAGCGCCTCAATAGCAAGCAATTTCAATTCTCAGTGAAATTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTATACAATACAAGAAGCTTGGCATGATTACTGTGAAAGAAAGAAGAGAGGGGGCGGAGATAGCCGGTTTCAAGATGCATTGGCTAAAATAGTTGGCCCCTCGACGAGCTTCGGTGCCACTCTTTATGCATCTGTATTCATATCGCATTTGCTGCAAGCTGTGCGGGGAGATCAACACGAGCAAACTGCTCAACTCACACGAGTGATGACACTACCGCCGCCTCCGAAGCCAGACGACGAGCAAGGCAACCCAAGCTTCACCATCTTGAATCTTTAA 2061 42.12 MGSQIPKTVRSRLSPRSILECIQRGFSSASKIFRRVKHSGDRPVKKSEFWNKILDPQKPFLRQWNKIFVLSSVIAVAVDPLFFYTPEFNEGKHCLTVNKNLMIIASVLRSFIDLFYLLHMIFEFRTGYLPPSLPVFGSGELIKDPAAIAKRYLSSNFLIDILSILPMPQLLVFVIVPLEKGVVQWKTTDILKLAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQTKCWLEGCKNCSDTILYCGGKHLSKEMYASISEYCSPKESKDDNKTFELGMFAEALKFNLTETTGFHRKFFYSFWWALRNVGSSGQNLEVTHYIGDVFFAVFIAFLGLVLFALLISNIQKYLQSTTVKLEQMRINRRDAEHWMAHRMLPDNLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRKDIKRHLCLALLKKVPLFSSMDKQLLDSMCEYLNPVLFTEESFILQEGDPIDMMLFIMKGKLATIITYGRKNDLHSATLNAGDFCGEELVQWAMDPISTSIPISTRTVKTQTEVEAFALKAPDLKYVTSQFHTQRLNSKQFQFSVKFYSHQWKVWAAYTIQEAWHDYCERKKRGGGDSRFQDALAKIVGPSTSFGATLYASVFISHLLQAVRGDQHEQTAQLTRVMTLPPPPKPDDEQGNPSFTILNL 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 564415 570006 - Sed0018629.2 Sed12g0101 731057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0101 686 CDD CAP_ED 455 586 IPR000595 -
Sed12g0101 686 SMART cnmp_10 455 584 IPR000595 -
Sed12g0101 686 MobiDBLite consensus disorder prediction 664 686 - -
Sed12g0101 686 SUPERFAMILY cAMP-binding domain-like 384 570 IPR018490 -
Sed12g0101 686 Gene3D - 66 379 - -
Sed12g0101 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 39 612 - -
Sed12g0101 686 Gene3D Jelly Rolls 453 571 IPR014710 -
Sed12g0101 686 SUPERFAMILY Voltage-gated potassium channels 55 377 - -
Sed12g0101 686 FunFam Cyclic nucleotide-gated ion channel 1 382 446 - -
Sed12g0101 686 ProSiteProfiles cAMP/cGMP binding motif profile. 455 539 IPR000595 -
Sed12g0101 686 Gene3D Helix hairpin bin 382 446 - -
Sed12g0101 686 Pfam Ion transport protein 64 382 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1743 Sed-Chr2:52318503 Sed12g0101 Sed-Chr12:564415 1.90E-200 dispersed
Sed12g0101 Sed-Chr12:564415 Sed12g0103 Sed-Chr12:564415 0.00E+00 dispersed
Sed12g0100 Sed-Chr12:564415 Sed12g0101 Sed-Chr12:564415 0.00E+00 tandem
Sed12g0101 Sed-Chr12:564415 Sed12g0102 Sed-Chr12:564415 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0101 K05391 - csv:101206492 1060.44