Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0102 ATGGGTTCTCAGATACCAAAAACTGTAAGCTTTGAACAACCAACTTATGATTTCCATGACAAATATGAATTCTACCAAAATAGAAGCAGGCTGTCTCCAAGGTCAATATTGGAATGCATACAGAGAGGATTTTCAAGTGCTTCTAAGATCTTCAGAAGGGTAAAGCATTCAGGTGATCGGCCAGTAAAGAAATCAGAATTTTGGAATAAAATTCTTGATCCACAAAAGCCTTTTCTTCGGCAATGGAACAAGATATTTGTGTTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTCTCTTCTTTTACACCCCAGAGTTTAATGAAGGCAAACATTGCCTAACCGTGAACAAAAATCTTATGATCATTGCTTCTGTTCTTCGTTCATTCATCGACTTATTTTATCTACTTCACATGATCTTCGAGTTTCGAACTGGATATCTGCCCCCTTCTTTACCAGTATTTGGAAGTGGCGAATTAATCAAAGATCCAGCAGCTATAGCAAAGAGATACCTCTCTTCAAACTTCTTGATTGATATCTTATCCATTCTCCCAATGCCTCAGCTATTGGTATTTGTAATTGTACCTCTAGAGAAAGGCGTGGTTCAATGGAAGACGACAGACATCCTGAAGCTTGCGGTTCTTTTGCAATATATTCCAAGGCTTCTTCGAATTTATCCATTATACAGAGAAGTAACAAGAACTTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCTTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAACAAAATGCTGGCTGGAAGGATGCAAAAACTGTTCAGACACAATTCTGTACTGTGGAGGTAAACATCTTAGTAAAGAAATGTACGCATCTATTAGTGAGTATTGCTCTCCTAAGGAGTCTAAAGATGACAATAAGACCTTCGAGCTCGGGATGTTCGCCGAAGCCCTTAAGTTTAATTTAACCGAGACGACAGGTTTTCACCGCAAATTCTTCTATTCCTTCTGGTGGGCTCTACGAAATGTCGGCTCAAGTGGACAAAACCTTGAAGTAACCCACTATATAGGGGATGTTTTTTTTGCTGTCTTCATTGCCTTTCTTGGTTTAGTTTTGTTTGCCTTACTCATTAGCAATATTCAGAAATATTTGCAGTCAACAACTGTGAAACTAGAGCAGATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCGGATAACTTAAGGCAGCGTATTAGGCGATACGATCAATACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGTAACCTTCCAAAAGACCTTAGGAAAGACATCAAACGCCATCTTTGCTTGGCACTTCTCAAGAAAGTGCCGCTTTTCAGCAGCATGGATAAGCAACTGTTGGACTCGATGTGCGAATATCTCAATCCTGTGTTGTTCACAGAAGAGAGCTTCATTTTGCAAGAGGGTGATCCAATTGATATGATGCTATTCATCATGAAAGGAAAGCTAGCTACCATTATTACTTACGGTAGGAAAAACGACTTGCACTCAGCCACTCTTAATGCTGGCGACTTTTGTGGCGAAGAGCTAGTTCAATGGGCTATGGATCCAATCTCCACTTCTATTCCCATTTCAACCAGGACAGTTAAAACTCAAACTGAGGTTGAAGCCTTTGCTCTAAAGGCTCCTGATCTGAAGTATGTTACTAGCCAGTTCCACACCCAGCGCCTCAATAGCAAGCAATTTCAATTCTCAGTGAAGTATGCGTTTATAAGTTGTTATACTATTACTTTCATTTAA 1845 40.27 MGSQIPKTVSFEQPTYDFHDKYEFYQNRSRLSPRSILECIQRGFSSASKIFRRVKHSGDRPVKKSEFWNKILDPQKPFLRQWNKIFVLSSVIAVAVDPLFFYTPEFNEGKHCLTVNKNLMIIASVLRSFIDLFYLLHMIFEFRTGYLPPSLPVFGSGELIKDPAAIAKRYLSSNFLIDILSILPMPQLLVFVIVPLEKGVVQWKTTDILKLAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQTKCWLEGCKNCSDTILYCGGKHLSKEMYASISEYCSPKESKDDNKTFELGMFAEALKFNLTETTGFHRKFFYSFWWALRNVGSSGQNLEVTHYIGDVFFAVFIAFLGLVLFALLISNIQKYLQSTTVKLEQMRINRRDAEHWMAHRMLPDNLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRKDIKRHLCLALLKKVPLFSSMDKQLLDSMCEYLNPVLFTEESFILQEGDPIDMMLFIMKGKLATIITYGRKNDLHSATLNAGDFCGEELVQWAMDPISTSIPISTRTVKTQTEVEAFALKAPDLKYVTSQFHTQRLNSKQFQFSVKYAFISCYTITFI 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 564415 570006 - Sed0018629.3 Sed12g0102 731058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0102 614 FunFam Cyclic nucleotide-gated ion channel 1 400 464 - -
Sed12g0102 614 SUPERFAMILY Voltage-gated potassium channels 73 395 - -
Sed12g0102 614 Gene3D - 84 397 - -
Sed12g0102 614 ProSiteProfiles cAMP/cGMP binding motif profile. 473 557 IPR000595 -
Sed12g0102 614 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 604 - -
Sed12g0102 614 CDD CAP_ED 473 580 IPR000595 -
Sed12g0102 614 Pfam Ion transport protein 82 400 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g0102 614 Gene3D Jelly Rolls 471 589 IPR014710 -
Sed12g0102 614 Gene3D Helix hairpin bin 400 464 - -
Sed12g0102 614 SUPERFAMILY cAMP-binding domain-like 402 588 IPR018490 -
Sed12g0102 614 SMART cnmp_10 473 602 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1745 Sed-Chr2:52332684 Sed12g0102 Sed-Chr12:564415 6.20E-207 dispersed
Sed12g0100 Sed-Chr12:564415 Sed12g0102 Sed-Chr12:564415 0.00E+00 dispersed
Sed12g0102 Sed-Chr12:564415 Sed13g0079 Sed-Chr13:510575 2.70E-156 dispersed
Sed12g0101 Sed-Chr12:564415 Sed12g0102 Sed-Chr12:564415 0.00E+00 tandem
Sed12g0102 Sed-Chr12:564415 Sed12g0103 Sed-Chr12:564415 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0102 K05391 - csv:101206492 897.886