Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0120 ATGGGGACTAGTGAAGAGGCAAAGGCAGTGAAGCCTGAAAAAGTGGCTTCACCAACGCAGGATCAAAACAATGTGTCAAATTCAGCCAATGTTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACCCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGGCCCACCACAGATGATTCCTCCATATGGCACTCCTTATGCAGCAATCTATTCACATGGTGGTGTTTATGCACATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGCTGCCGCCATAACTCCTTTGAGCATTGAGACACCTTCAAAGGTGTCTGGAAATAGTAGTCAAGGTCTAATGAAGAAACTGAAAGGATTTGATGGCCTCGCAATGTCTATTGGCAATGTTAGTACTGGGAGTGCTGATGGGGGAGCCGAGCAAAGGCCGTCAGAGAGTATGGAAACTGAAGGTTCCAGTGGTGGAAGTGATGGAACTACTGCCGGGGCGAATCAAAACAAAACAAAAAGAAGCCGTGAGGGAACACCTACCACTGTTAAGGATGCAAAAATTGAGACACAAGGAAGTCCGGTTAGTGCTCCTGAAATGAATGAAGGCTGTACCAAGTTGATGGGCACAACCAAAGCAGCTGATGCAATTGGAAAGCTTGGATCTGTGATTTCTCCCAGAATGTCTACAACGTTGGAATTGAGGAATCCTTCTAGTATAAACACCATTTCAGGTCCAACTAGCATTCTGCCTGGTTCGATATTGTCTCCTGAAGTCTGGCTGCAGAATGAAAAAGAACTGAAACGGGAAAGGAGAAAACTGTCAAATAGAGAATCCGCTAGGAGGTCAAGGCTGAGGAAGCAGGCCGAGACTGAAGAACTAGCTCGTAAAGTCGATTCATTGACTGCAGAGAATGTTTCTATTCGATCCGAGTTAAGTCGATTGGCAGAGAATTCCGAGAAACTTAAACAAGAAAACACTACATTGATGGAGAAGCTTAAAAGCGCTCAATCAGGACGAACAGAAGCGTTGGACATGAACGAAAAGAGGATGCAACAGCCTGTGAATAAAAGCATTAACGAAGAGAGTAATGTCTGCAAGAAAAGCTCGAGTTCGGGTGCAAAACTGCGTCAACTTTTGGACACGAGTCCAAGGGCCGATGCAGTTGCGGCCAGCTAA 1233 46.23 MGTSEEAKAVKPEKVASPTQDQNNVSNSANVHVFPDWAAMQAYYGPRVAVPPYYNPAVASGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAAAITPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTGSADGGAEQRPSESMETEGSSGGSDGTTAGANQNKTKRSREGTPTTVKDAKIETQGSPVSAPEMNEGCTKLMGTTKAADAIGKLGSVISPRMSTTLELRNPSSINTISGPTSILPGSILSPEVWLQNEKELKRERRKLSNRESARRSRLRKQAETEELARKVDSLTAENVSIRSELSRLAENSEKLKQENTTLMEKLKSAQSGRTEALDMNEKRMQQPVNKSINEESNVCKKSSSSGAKLRQLLDTSPRADAVAAS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 699780 705551 + Sed0002682.1 Sed12g0120 731076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0120 410 MobiDBLite consensus disorder prediction 153 202 - -
Sed12g0120 410 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 347 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0120 410 Pfam bZIP transcription factor 282 344 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0120 410 MobiDBLite consensus disorder prediction 153 194 - -
Sed12g0120 410 SMART brlzneu 282 346 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0120 410 Coils Coil 302 350 - -
Sed12g0120 410 MobiDBLite consensus disorder prediction 369 396 - -
Sed12g0120 410 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Sed12g0120 410 Gene3D - 285 339 - -
Sed12g0120 410 Pfam Disordered region downstream of MFMR 133 261 - -
Sed12g0120 410 MobiDBLite consensus disorder prediction 352 410 - -
Sed12g0120 410 CDD bZIP_plant_GBF1 287 335 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0120 410 SUPERFAMILY Leucine zipper domain 285 342 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0120 410 MobiDBLite consensus disorder prediction 1 27 - -
Sed12g0120 410 PANTHER G-BOX-BINDING FACTOR 3-RELATED 21 387 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Sed12g0120 410 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 289 304 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1720 Sed-Chr2:52133147 Sed12g0120 Sed-Chr12:699780 1.20E-176 dispersed
Sed02g1721 Sed-Chr2:52133147 Sed12g0120 Sed-Chr12:699780 1.20E-176 dispersed
Sed10g0905 Sed-Chr10:7011165 Sed12g0120 Sed-Chr12:699780 1.30E-17 dispersed
Sed12g0120 Sed-Chr12:699780 Sed14g1098 Sed-Chr14:20482606 5.20E-23 dispersed
Sed12g0120 Sed-Chr12:699780 Sed12g0121 Sed-Chr12:699780 1.10E-179 tandem
Sed12g0120 Sed-Chr12:699780 Sed02g1719 Sed-Chr2:52133147 9.70E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40079 PF16596 MFMR_assoc 4.80E-17 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0120 K09060 - csv:101213720 633.254