Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0157 ATGCGAGCCGAAGCAATGGCTGGCACAAGGCTTTTCATTCTCAAGTCGATTTATAGTTCCTTCAACTTTTATTCGAAGCCGTGCTCGTTTCAGTCTTGCAAGTCTTACATAAAGATTTCCGAGCACGCTGACCGGGTTGTTAGACCAAGTGTTCTAAATTTACAACACTGCAAAGATGAATCTCGCAGCTCGAAGAACATCTCACACATTGGTTTCCAAAGAGCAGCTTCTGTATGTCGTTTACATATGCACAGTTACGGTACATTGTTGCCTGCATCATCAGCGAAATACTGGAACACTATGCCTCTTACTTCTCTCAGCCTTCTGTCAAATCGTCGGTTATATTCATCGGCTTCTAGCGGGAAAGTTGATATAAATGGAGATGCTGGTGTTCCAGCAGCTACTTCTGGTGTTGATGTGGATATTAGCAACCCCTCAGATGTTGGAAGCAATTTGCTTGAAAGAGCTAAGGATGTCTGGCAGGGTGCTTTAGATGCAGCATCTTTTACTGGGCAGAAGGCTAGAGAAGTGTATGATGAGTTGTCTCCTTATGCAGATAAACTATTGGATTCACATCCATATCTAAGAAATGTAATTGTTCCTGTGAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTCGCCATACTATCTGGAAGCATATCTGTTGAGGAAATTCCCTATGAGAAAAGTTTTTGGGGTGCCTTGGAGGATCCTTTACGATATCTGGTTACCTTCTTTGCATTCTCTCAAATTGGCACAATGGTTGCACCAACCGCAGTAGCATCAGAGTTTGTTTCACAGGCATGCAGGGGAGCTGTTATCCTTTCCCTTGTCTGGTTTATATATCGTTGGAAAACAAACGTGTTATCTCGAGCCTTGGTCTCCCAGAATTTTGCAAGGCTTGAGCGGGAAAGGCTAATTACACTAGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCAAGGGACGTACTTGGGAATTTTCTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCTCTCGGGGATACAATCAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGTCTCATGACAACATCATTATTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGTCAGGTAATTATAAATAAGTCTCGAGCGCAATGGCGGGCAATCACGAAGAAAATTCCCTTGCAAGTTGATGATCTTAGTACGGTTTCTCAGATATCGGATTATATTAAGAGTATGCTTAGGTCTCACCCTAAAGTGTTCTTGGGAAAGGAGGCTCCTTATGCTTTCCTCTCCCAAATTGAAAGCACATATGCAGAATTGACAATTGGTTGCAACCTTCAAAAGATGGGTAAAGAAGAGCTTTTCTCTACTGAGCAAGATATTCTTCTTCAATCAGTGCAAATCATTAAGGAAAATGGCGCAACCCTAGGTACTACCATGTCGGATTGGACAAACAAGTGA 1632 42.77 MRAEAMAGTRLFILKSIYSSFNFYSKPCSFQSCKSYIKISEHADRVVRPSVLNLQHCKDESRSSKNISHIGFQRAASVCRLHMHSYGTLLPASSAKYWNTMPLTSLSLLSNRRLYSSASSGKVDINGDAGVPAATSGVDVDISNPSDVGSNLLERAKDVWQGALDAASFTGQKAREVYDELSPYADKLLDSHPYLRNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSGSISVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVSQACRGAVILSLVWFIYRWKTNVLSRALVSQNFARLERERLITLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDVLGNFLSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLQVDDLSTVSQISDYIKSMLRSHPKVFLGKEAPYAFLSQIESTYAELTIGCNLQKMGKEELFSTEQDILLQSVQIIKENGATLGTTMSDWTNK 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 906125 910701 + Sed0023991.1 Sed12g0157 731113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0157 543 SUPERFAMILY Sm-like ribonucleoproteins 372 437 IPR010920 -
Sed12g0157 543 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 289 371 IPR011014 GO:0016020(InterPro)
Sed12g0157 543 Pfam Mechanosensitive ion channel, beta-domain 372 439 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g0157 543 Gene3D - 388 436 IPR023408 -
Sed12g0157 543 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 167 539 - -
Sed12g0157 543 Gene3D - 284 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0157 Sed-Chr12:906125 Sed12g0158 Sed-Chr12:906125 8.80E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0157 K22047 - csv:101220483 802.357